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Newly Characterized Genes

CHECK HERE FOR DESCRIPTIONS OF NEWLY CHARACTERIZED MAIZE GENES!

With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.

MaizeGDB prefers not to assign formal gene names to gene models based purely on orthology. Known difficulties include inclusivity (there are over 10,000 functionally characterized Arabidopsis genes)* and some likelihood of errors in inferred functions. Unlike gene models, gene names are generally conserved unless differently named genes are found to be allelic. Of particular note, naming priveleges are customarily held by researchers who first confirm function.

We encourage researchers to use the annotation tool on the MaizeGDB gene model pages to add their insights about putative function, especially when not currently part of the Phytozome or Gramene pipelines.

Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.

If you cannot find the gene you would like to recommend in the database, send us an email so that we can add it to the database!

This page is based on our monthly release. The updates are made around 4:00am CST.


         Recommended Genes

One month | Six months | One year | All time

New or updated genes since one month ago. The cutoff date is March 21st, 2018.

Last UpdateGeneFull Name : DescriptionChromosome
or Bin		Gene
Model		Recent ReferenceOrthologsUpdate information
yesterdaylox3 lipoxygenase3:
3.06
    Battilani, P et al. 2018. Mol Plant Pathol pp.doi: 10.1111/mpp.12690     Reference: April 20th, 2018
Gene Product: January 3rd, 2018
Variation: November 14th, 2014
yesterdayast91 anti-sigma factor antagonist domain of sulfate transporter91:
2.02
 GRMZM2G395114
 Huang, Q et al. 2018. J Plant Physiol 220:24-33   AT1G23090 (TAIR)
LOC_Os04g55800 (MSU/TIGR) 		Reference: November 14th, 2017
Gene Product: April 20th, 2018
Variation: February 2nd, 2018
Gene Model: February 2nd, 2018
yesterdaysfp5 sulfate transporter5:
9.02
 GRMZM2G444801
 Huang, Q et al. 2018. J Plant Physiol 220:24-33     Reference: November 14th, 2017
Gene Product: April 20th, 2018
Gene Model: March 14th, 2018
yesterdaysfp1 sulfate permease1:
1.02
 GRMZM2G159632
 Huang, Q et al. 2018. J Plant Physiol 220:24-33     Reference: November 14th, 2017
Gene Product: April 20th, 2018
Gene Model: February 3rd, 2015
yesterdaylox4 lipoxygenase4:
1.09
 GRMZM2G109056
 Battilani, P et al. 2018. Mol Plant Pathol pp.doi: 10.1111/mpp.12690     Reference: April 20th, 2018
Gene Product: January 3rd, 2018
Variation: April 20th, 2018
Gene Model: June 10th, 2014
yesterdaylox5 lipoxygenase5:
5.02
 GRMZM2G102760
 Battilani, P et al. 2018. Mol Plant Pathol pp.doi: 10.1111/mpp.12690     Reference: April 20th, 2018
Gene Product: January 3rd, 2018
Variation: April 20th, 2018
Gene Model: June 10th, 2014
yesterdaylox12 lipoxygenase12: single copy, required for resistance to Fusarium stalk and ear rot
3.04
 GRMZM2G106748
 Battilani, P et al. 2018. Mol Plant Pathol pp.doi: 10.1111/mpp.12690     Reference: April 20th, 2018
Gene Product: January 3rd, 2018
Variation: August 15th, 2014
Gene Model: June 10th, 2014
yesterdaysfp2 sulfate transporter2:
 
 GRMZM2G080178
 Huang, Q et al. 2018. J Plant Physiol 220:24-33     Reference: November 14th, 2017
Gene Product: April 20th, 2018
Gene Model: November 13th, 2017
yesterdaysfp4 sulfate transporter4:
 
 GRMZM2G154211
 Huang, Q et al. 2018. J Plant Physiol 220:24-33     Reference: November 14th, 2017
Gene Product: April 20th, 2018
Gene Model: November 13th, 2017
yesterdaysfp6 sulfate transporter6:
 
 GRMZM2G158013
 Huang, Q et al. 2018. J Plant Physiol 220:24-33     Reference: November 14th, 2017
Gene Product: April 20th, 2018
Gene Model: November 13th, 2017
yesterdaysfp7 sulfate transporter7:
 
 GRMZM2G068212
 Huang, Q et al. 2018. J Plant Physiol 220:24-33     Reference: November 14th, 2017
Gene Product: April 20th, 2018
Gene Model: November 13th, 2017
yesterdaysfp3 sulfate transporter3:
1.02
 GRMZM2G042171
 Huang, Q et al. 2018. J Plant Physiol 220:24-33     Reference: November 14th, 2017
Gene Product: April 20th, 2018
Gene Model: November 13th, 2017
2 days agoo2 opaque endosperm2: like o1; high lysine content; regulates b-32 protein (see rip1); reduced lysine degradation (lysine-ketoglutaric reductase); SSRs phi057, 112
7.01
    Sarika, K et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.04.014     Reference: April 19th, 2018
Gene Product: September 1st, 2003
Variation: June 6th, 2016
2 days agoo*-QCL3024 opaque*-QCL3024: mutant has opaque/high-lysine endosperm
 
    Sarika, K et al. 2018. Plant Sci pp.doi: 10.1016/j.plantsci.2018.04.014     Reference: April 19th, 2018
Variation: February 16th, 2013
2 days agomurE1 mureinE1: orthologous to At1g63680Maize ortholog of Arabidopsis MurE. Associates with Plastid Encoded RNA polymerase (PEP). Required for PEP-mediated transcription. (A. Barkan, 2015)
 
 GRMZM2G009070
 Pfalz, J et al. 2015. New Phytol 206:1024-1037   At1g63680 (TAIR) Reference: December 4th, 2015
Gene Product: April 19th, 2018
Variation: January 22nd, 2015
Gene Model: January 21st, 2015
2 days agonap1 nucleosome assembly protein1:
 
 GRMZM2G157019
     Variation: April 19th, 2018
Gene Model: April 19th, 2018
3 days agopdk1 pyruvate, orthophosphate dikinase1: cDNA, genomic and peptide sequences; microsatellite mapped (SSRs phi025, phi078, phi081; nc012 ); cytosolic or plastidic, dependent on transcript processingmutant seedlings are pale green and lethal once kernel reserves are exhaused, even when plants were grown under 2% CO2
6.05
 GRMZM2G306345
 Zhang, YL et al. 2018. J Integr Plant Biol pp.doi: 10.1111/jipb.12656     Reference: April 18th, 2018
Gene Product: July 28th, 2014
Variation: April 18th, 2018
Gene Model: November 21st, 2012
4 days agoumc1117  : Alba DNA/RNA-binding protein
4.04
 GRMZM2G050982
     Variation: September 1st, 2003
Gene Model: April 17th, 2018
4 days agoumc1142  :
4.05
 GRMZM2G030125
     Variation: September 1st, 2003
Gene Model: April 17th, 2018
4 days agoumc1964  :
4.05
 GRMZM2G075496
     Variation: September 1st, 2003
Gene Model: April 17th, 2018
4 days agocsu221  :
4.00
 GRMZM2G131409
 Baysdorfer, C. 1994. cDNA sequence submission to dbEST     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 17th, 2018
4 days agocsu235  : similar to Arabidopsis chaperone DnaJ-domain containing protein
4.03
 GRMZM2G124644
 Baysdorfer, C. 1994. cDNA sequence submission to dbEST     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 17th, 2018
4 days agoAY110355  :
4.06
 GRMZM2G074436
     Variation: July 29th, 2004
Gene Model: April 17th, 2018
4 days agoAY110631  :
4.08
 GRMZM2G439311
     Variation: July 29th, 2004
Gene Model: April 17th, 2018
7 days agosnrkII4 SnRK2 serine threonine protein kinase 4:
3.06
 GRMZM2G110922
 Huai, JL. 2008. Plant Cell Rep. 27:1861-8     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
7 days agosnrkII6 SnRK2 serine threonine protein kinase6:
4.05
 GRMZM2G130018
 Huai, JL. 2008. Plant Cell Rep. 27:1861-8     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Variation: November 12th, 2014
Gene Model: November 12th, 2014
7 days agosnrkII8 SnRK2 serine threonine protein kinase8: salt tolerance expressed in Arabidopsis host (Vilela 2013)
 
 GRMZM2G138861
 Vilela, B et al. 2013. PLoS One 8:e58105     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
7 days agosnrkII1 SnRK2 serine threonine protein kinase1:
 
 GRMZM2G035809
 Huai, JL. 2008. Plant Cell Rep. 27:1861-8     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
7 days agosnrkII10 SnRK2 serine threonine kinase10:
 
 GRMZM2G066867
 Huai, JL. 2008. Plant Cell Rep. 27:1861-8     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
7 days agosnrkII9 SnRK2 serine threonine protein kinase9:
 
 GRMZM2G081915
 Huai, JL. 2008. Plant Cell Rep. 27:1861-8     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Gene Model: April 14th, 2018
7 days agosnrkII11 SnRK2 serine threonine protein kinase 11:
6.05
 GRMZM2G063961
 Huai, JL. 2008. Plant Cell Rep. 27:1861-8     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
7 days agosnrkII2 SnRK2 serine threonine protein kinase2: induced by cold, salt and ABA
7.04
 GRMZM2G056732
 Huai, JL. 2008. Plant Cell Rep. 27:1861-8     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
7 days agosnrkII5 SnRK2 serine threonine kinase5:
10.07
 GRMZM2G110908
 Huai, JL. 2008. Plant Cell Rep. 27:1861-8     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
7 days agosnrkII7 SnRK2 serine threonine protein kinase7:
2.04
 GRMZM2G155593
 Huai, JL. 2008. Plant Cell Rep. 27:1861-8     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
7 days agosnrkII3 SnRK2 serine threonine protein kinase3:
1.05
 GRMZM2G180916
 Huai, JL. 2008. Plant Cell Rep. 27:1861-8     Reference: February 11th, 2015
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
8 days agoAY110170  :
4.09
 GRMZM2G155253
     Variation: July 29th, 2004
Gene Model: April 13th, 2018
8 days agoAY110290  : similar to Arabidopsis putative S-acyltransferase
4.05
 GRMZM5G821611
     Variation: July 29th, 2004
Gene Model: April 13th, 2018
8 days agoAY110310  : similar to Arabidopsis P-glycoprotein 2
4.06
 GRMZM2G004748
     Variation: July 29th, 2004
Gene Model: April 13th, 2018
9 days agoAY109715  :
4.00
 GRMZM2G145725
     Variation: July 29th, 2004
Gene Model: April 12th, 2018
9 days agoAY109980  :
4.08
 GRMZM2G363038
     Variation: July 29th, 2004
Gene Model: April 12th, 2018
9 days agoAY109933  :
4.09
 GRMZM2G078832
     Variation: September 25th, 2007
Gene Model: April 12th, 2018
13 days agoki1 Kindr-RNAi1: preferential segregation of knobs and loci linked to knobs associated with Abnormal chromosome 10 (Ab10)
 
    Dawe, RK et al. 2018. Cell 173:doi: 10.1016/j.cell.2018.03.009     Reference: April 7th, 2018
Variation: April 8th, 2018
14 days agosmd1 suppressor of meiotic drive1: preferential segregation of knobs and loci linked to knobs associated with Abnormal chromosome 10 (Ab10)
10.06
    Dawe, RK et al. 2018. Cell 173:doi: 10.1016/j.cell.2018.03.009     Reference: April 7th, 2018
Variation: April 7th, 2018
14 days agosmd12 suppressor of meiotic drive12: preferential segregation of knobs and loci linked to knobs associated with Abnormal chromosome 10 (Ab10)
 
    Dawe, RK et al. 2018. Cell 173:doi: 10.1016/j.cell.2018.03.009     Reference: April 7th, 2018
Variation: April 7th, 2018
15 days agome3 NADP malic enzyme3: chloroplast C4-photosynthesis, delivers CO2 to ribulose bisphosphate carboylase
3.02
    Borba, AR et al. 2018. Mol Biol Evol pp.doi: 10.1093/molbev/msy060/4962173     Reference: April 6th, 2018
Gene Product: August 21st, 2014
Variation: September 1st, 2003
15 days agomet1 DNA methyl transferase1: cDNA clones
7.01
 GRMZM2G333916
 Candaele, J et al. 2014. Plant Physiol 164:1350-1364     Reference: December 25th, 2014
Gene Product: April 6th, 2018
Variation: December 25th, 2014
Gene Model: December 24th, 2014
15 days agome2 NADP-dependent malic enzyme2: cDNA in roots, preprotein contains chloroplast transit peptide sequences and is imported and processed; C3-like enzyme
6.05
 GRMZM2G122479
 Borba, AR et al. 2018. Mol Biol Evol pp.doi: 10.1093/molbev/msy060/4962173     Reference: April 6th, 2018
Gene Product: August 21st, 2014
Variation: August 24th, 2014
Gene Model: August 21st, 2014
15 days agomet2 DNA methyl transferase2:
10.06
 GRMZM2G025592
 McGinnis, K et al. 2007. Plant Physiol 143:1441-51     Reference: December 7th, 2017
Gene Product: April 6th, 2018
Variation: December 22nd, 2014
Gene Model: November 16th, 2011
15 days agomet5 DNA methyl transferase5:
2.02
 GRMZM2G005310
 McGinnis, K et al. 2007. Plant Physiol 143:1441-51     Reference: December 7th, 2017
Gene Product: April 6th, 2018
Variation: December 22nd, 2014
Gene Model: December 22nd, 2014
15 days agomet3 DNA methyl transferase3:
9.07
    Candaele, J et al. 2014. Plant Physiol 164:1350-1364     Reference: December 25th, 2014
Gene Product: April 6th, 2018
Variation: February 13th, 2016
15 days agomet7 DNA methyl transferase7:
1.01
    Candaele, J et al. 2014. Plant Physiol 164:1350-1364     Reference: December 25th, 2014
Gene Product: April 6th, 2018
Variation: December 22nd, 2014
15 days agomet8 DNA methyl transferase8:
 
 GRMZM2G334041
 Candaele, J et al. 2014. Plant Physiol 164:1350-1364     Reference: December 25th, 2014
Gene Product: April 6th, 2018
Variation: December 25th, 2014
Gene Model: December 24th, 2014
15 days agomet4 DNA methyl transferase4:
8.05
 GRMZM2G157589
 Candaele, J et al. 2014. Plant Physiol 164:1350-1364     Reference: December 25th, 2014
Gene Product: April 6th, 2018
Variation: February 10th, 2010
Gene Model: December 22nd, 2014
15 days agomet6 DNA methyl transferase6:
8.05
 GRMZM2G065599
 Candaele, J et al. 2014. Plant Physiol 164:1350-1364     Reference: December 25th, 2014
Gene Product: April 6th, 2018
Variation: November 20th, 2012
Gene Model: December 23rd, 2014
15 days agodmt104 DNA methyl transferase 104:
 
        Gene Product: April 6th, 2018
16 days agobhlh104  : Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.04
 GRMZM2G088443
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: April 5th, 2018
Gene Model: March 31st, 2018
16 days agohda108 histone deacetylase: mutant plants exhibit many developmental defects: significant reduction in plant height, alterations of shoot and leaf development, alterations of inflorescence patterning and fertility
4.05
    Forestan, C et al. 2018. Genetics 208:1443-1466     Reference: April 5th, 2018
Gene Product: September 1st, 2003
Variation: February 1st, 2018
16 days agodmc1 disrupted meiotic cDNA homolog1:
 
 GRMZM2G109618
 Feng, C et al. 2018. Plant Biotechnol J pp.doi: 10.1111/pbi.12920     Reference: April 5th, 2018
Variation: May 12th, 2017
Gene Model: January 27th, 2017
17 days agoafd1 absence of first division1: male and female sterility; early meiosis
6.07
 GRMZM2G059037
 Curtis, CA and Doyle, GG. 1992. J Hered 83:335-341   AT5G05490 (TAIR)
LOC_Os05g50410 (MSU/TIGR)
LOC_Os05g50410 (Gramene) 		Reference: April 4th, 2018
Gene Product: July 30th, 2009
Variation: August 11th, 2011
Gene Model: July 14th, 2011
17 days agoam1 ameiotic1: male and female sterility - anaphase I equatorial; alleles am1-pra1(was pra1), am1-2 (was am2)affects switch to meiotic cell cycle
5.02
    Curtis, CA and Doyle, GG. 1992. J Hered 83:335-341     Reference: April 4th, 2018
Variation: August 11th, 2011
17 days agody1 desynaptic1: partial to complete male and female sterility; chromosomes separate after synapsis
 
    Curtis, CA and Doyle, GG. 1992. J Hered 83:335-341     Reference: April 4th, 2018
Variation: June 21st, 2012
17 days agopam1 plural abnormalities of meiosis1: desynchronized meiotic divisions and premeiotic mitosis; male sterile, incompletely female sterile
1.05
    Curtis, CA and Doyle, GG. 1992. J Hered 83:335-341     Reference: April 4th, 2018
Variation: September 1st, 2003
17 days agopam2 plural abnormalities of meiosis2: like pam1
 
    Curtis, CA and Doyle, GG. 1992. J Hered 83:335-341     Reference: April 4th, 2018
Variation: September 1st, 2003
17 days agopo1 polymitotic1: (aka ms4, ms6) repeats 2nd meiotic division in male and female
6.01 - 6.01
    Curtis, CA and Doyle, GG. 1992. J Hered 83:335-341     Reference: April 4th, 2018
Variation: May 20th, 2006
17 days agova1 variable sterile1: variable male and female fertility; cytokinesis fails in anaphase I
7.03
    Curtis, CA and Doyle, GG. 1992. J Hered 83:335-341     Reference: April 4th, 2018
Variation: September 1st, 2003
17 days agoumc60  :
3.06
 GRMZM2G094771
 Ragot, M; Sisco, PH; Hoisington, DA; Stuber, CW. 1995. Crop Sci 35:1306-1315     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 4th, 2018
17 days agodv1 divergent spindle1: chromosomes unoriented at metaphase I; partial male and female sterility; encodes a kinesin-14A motor protein
2.02
 GRMZM2G114861
 Curtis, CA and Doyle, GG. 1992. J Hered 83:335-341     Reference: April 4th, 2018
Gene Product: November 10th, 2017
Variation: August 17th, 2016
Gene Model: August 13th, 2014
18 days agoumc3b  : NPI linkage catalog of 1/25/91 calls this locus umc3 in one place and umc3b in another.
3.07
 GRMZM2G454081
 Beavis, WD et al. 1991. Theor Appl Genet 83:141-145     Reference: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 3rd, 2018
18 days agoumc2118  :
3.00 - 3.01
 GRMZM5G884242
     Variation: April 3rd, 2018
Gene Model: April 3rd, 2018
18 days agoumc2270  :
3.06
 GRMZM2G047384
     Variation: February 24th, 2007
Gene Model: April 3rd, 2018
18 days agocbl10 calcineurin B-like10:
3.09
 GRMZM2G116584
 Zhang, F et al. 2016. Plant Sci 253:118-129     Reference: December 27th, 2016
Gene Product: October 19th, 2016
Gene Model: April 3rd, 2018
19 days agoumc1273  :
3.08
 GRMZM2G047298
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1311  :
3.06
 GRMZM2G105184
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1320  :
3.08
 GRMZM5G824843
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1392  :
3.04
 GRMZM2G395983
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1394  :
3.01
 GRMZM5G848602
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1399  :
3.07
 GRMZM2G055898
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1404  :
3.07
 GRMZM2G069061
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1449  :
3.04
 GRMZM2G061655
     Variation: February 24th, 2007
Gene Model: April 2nd, 2018
19 days agoumc1458  : similar to Arabidopsis kinase-like protein
3.02
 GRMZM2G055089
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1489  :
3.07
 GRMZM2G077307
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1495  :
3.04
 GRMZM2G161154
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1504  :
3.04
 GRMZM2G034855
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoiaa11 Aux/IAA-transcription factor 11: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.04
 GRMZM2G167794
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1608  :
3.04
 GRMZM5G871336
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1717a  :
3.04
 GRMZM2G076029
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1742  :
3.04
 GRMZM2G114552
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1767  :
3.07
 AC210193.4_FG002
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1773  :
3.04
 GRMZM2G390374
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1780  : similar to Arabidopsis ENTH/VHS/GAT family protein
3.00
 GRMZM2G153138
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
19 days agoumc1813  :
3.09
 GRMZM2G117685
     Variation: September 1st, 2003
Gene Model: April 2nd, 2018
21 days agopal7 phenylalanine ammonia lyase7:
 
 GRMZM2G170692
 Sun, Q et al. 2018. Molecular Plant pp.doi: 10.1016/j.molp.2018.03.013     Reference: March 31st, 2018
Gene Product: September 1st, 2003
Gene Model: May 6th, 2016
21 days agopal8 phenylalanine ammonia lyase8:
 
 GRMZM2G334660
 Sun, Q et al. 2018. Molecular Plant pp.doi: 10.1016/j.molp.2018.03.013     Reference: March 31st, 2018
Gene Product: September 1st, 2003
Gene Model: May 17th, 2016
21 days agolac3 laccase3:
 
 GRMZM2G169033
 Sun, Q et al. 2018. Molecular Plant pp.doi: 10.1016/j.molp.2018.03.013     Reference: March 31st, 2018
Gene Product: March 31st, 2018
Gene Model: March 31st, 2018
21 days agolac5 laccase5:
 
 GRMZM2G367668
 Sun, Q et al. 2018. Molecular Plant pp.doi: 10.1016/j.molp.2018.03.013     Reference: March 31st, 2018
Gene Product: March 31st, 2018
Gene Model: March 31st, 2018
21 days agolac2 laccase2:
 
 GRMZM2G146152
 Caparros-Ruiz, D et al. 2006. Plant Sci 171:217-225     Reference: March 31st, 2018
Gene Product: March 31st, 2018
Gene Model: March 31st, 2018
21 days agolac4 laccase4:
 
 GRMZM2G072780
 Caparros-Ruiz, D et al. 2006. Plant Sci 171:217-225     Reference: March 31st, 2018
Gene Product: March 31st, 2018
Gene Model: March 31st, 2018
21 days agolac6 laccase6:
 
 GRMZM2G164467
     Gene Product: March 31st, 2018
Gene Model: March 31st, 2018
21 days agolac1 laccase1:
 
 GRMZM5G842071
 Caparros-Ruiz, D et al. 2006. Plant Sci 171:217-225     Reference: March 31st, 2018
Gene Product: March 31st, 2018
Gene Model: March 31st, 2018
22 days agouaz288a(ppi)  :
3.05
 GRMZM2G063949
 Helentjaris, T. 1994. Nucleotide sequence submission to dbEST/GenBank     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: March 30th, 2018
22 days agoumc1135  :
3.07
 GRMZM2G105863
     Variation: September 1st, 2003
Gene Model: March 30th, 2018
22 days agoumc1174  :
3.05
 AC210168.4_FG003
     Variation: September 1st, 2003
Gene Model: March 30th, 2018
23 days agobx4 benzoxazinone synthesis4: endoplasmic reticulum P450 monoxygenase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings; NAM SNP PHM1184
4.01
 GRMZM2G172491
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: October 24th, 2011
Variation: October 27th, 2011
Gene Model: October 24th, 2011
23 days agobx14 benzoxazinone synthesis14: encodes an O-methyltransferase that converts DIM2BOA-Glc to HDM2BOA-Glc.
2.05
 GRMZM2G127418
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: July 8th, 2013
Variation: June 20th, 2016
Gene Model: June 20th, 2016
23 days agobx1 benzoxazinless1: plastid localized, committed step in cyclic hydroxamates/DIMBOA synthesis; insect resistance in young seedlings; SSR umc1022
4.00
 GRMZM2G085381
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: October 14th, 2011
Variation: October 24th, 2011
Gene Model: October 14th, 2011
23 days agogl6 glossy6: like gl1, but seedling leaf surface bright green instead of bluish
3.05 - 3.05
    Beckett, JB. 1975. MNL 49:130-134     Reference: September 1st, 2003
Variation: March 29th, 2018
23 days agoorp1 orange pericarp1: duplicate factor with orp2; pericarp orange over orp1 orp2 kernels, manifesting metaxenia; lethal, tryptophan auxotroph
4.05
    Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: September 1st, 2003
Variation: May 19th, 2006
23 days agoorp2 orange pericarp2: duplicate factor with orp2; pericarp orange over orp1 orp2 kernels, manifesting metaxenia; lethal, tryptophan auxotroph
10.03
    Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: September 1st, 2003
Variation: September 1st, 2003
23 days agobx7 benzoxazinone synthesis7: cytosolic O-methyl transferase; synthesis of cyclohydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc2039, INDEL IDP478.
4.03
 GRMZM2G441753
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: October 31st, 2011
Variation: October 26th, 2011
Gene Model: October 19th, 2011
23 days agobx3 benzoxazinone synthesis3: endoplasmic reticulum monoxygenase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1017
4.01
 GRMZM2G167549
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: October 19th, 2011
Variation: November 12th, 2013
Gene Model: October 24th, 2011
23 days agobx5 benzoxazinone synthesis5: endoplasmic reticulum monoxygenase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1276.
4.01
 GRMZM2G063756
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: October 24th, 2011
Variation: October 27th, 2011
Gene Model: October 24th, 2011
23 days agobx2 benzoxazinone synthesis2: endoplasmic reticulum P450 monoxygenase; synthesis cyclic hyroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1164, umc1682
4.01
 GRMZM2G085661
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: April 8th, 2013
Variation: October 27th, 2011
Gene Model: October 24th, 2011
23 days agobx8 benzoxazinone synthesis8: cytosolic glucosyltransferase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings
4.01
 GRMZM2G085054
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: October 20th, 2011
Variation: October 31st, 2011
Gene Model: October 20th, 2011
23 days agobx9 benzoxazinone synthesis9: cytosolic glucosyl transferase; redundant with bx8; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings
1.06
 GRMZM2G161335
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: October 20th, 2011
Variation: October 27th, 2011
Gene Model: October 20th, 2011
23 days agotsa1 tryptophan synthase alpha subunit1: With products of orp1 and orp2 genes, forms tryptophan synthase. Plastidic.
 
 GRMZM5G841619
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: October 21st, 2011
Gene Model: October 14th, 2011
23 days agobx10 benzoxazinone synthesis10:
 
 GRMZM2G311036
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: July 8th, 2013
Gene Model: July 8th, 2013
23 days agobx11 benzoxazinone synthesis11:
 
 GRMZM2G336824
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: July 8th, 2013
Gene Model: July 8th, 2013
23 days agobx12 benzoxazinone synthesis12:
 
 GRMZM2G023325
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: July 8th, 2013
Variation: July 8th, 2013
Gene Model: July 8th, 2013
23 days agobx13 benzoxazinone synthesis13: encodes a 2-oxoglutarate-dependent dioxygenase that catalyzes the conversion of DIMBOA-Glc into a new benzoxazinoid intermediate (TRIMBOA-Glc) by an uncommon reaction involving a hydroxylation and a likely ortho-rearrangement of a methoxy group.
 
 AC148152.3_FG005
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: June 20th, 2016
Variation: June 20th, 2016
Gene Model: June 20th, 2016
23 days agoigps1 indole-3-glycerolphosphate synthase1:
 
 GRMZM2G106950
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: March 29th, 2018
Gene Model: March 29th, 2018
23 days agoigps2 indole-3-glycerolphosphate synthase2:
 
    Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: March 29th, 2018
23 days agoigps3 indole-3-glycerolphosphate synthase3:
 
 GRMZM2G145870
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: March 29th, 2018
Gene Model: March 29th, 2018
23 days agoigl1 indole-3-glycerol phosphate lyase1: mRNA production induced by volicitin, forms free indole
1.11
 GRMZM2G046191
 Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: October 14th, 2011
Variation: July 18th, 2014
Gene Model: July 11th, 2014
23 days agobx6 benzoxazinone synthesis6: cytosolic 2-oxoglutarate-dependent dioxygenase; synthesis of cyclohydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1232
4.01
    Zhou, S et al. 2018. Plant Cell Physiol pp.doi: 10.1093/pcp/pcy064     Reference: March 29th, 2018
Gene Product: June 20th, 2016
Variation: November 18th, 2011
24 days agorcc1 regulator of chromosome condensation1: similar to Arabidopsis Regulator of chromosome condensation (RCC1) family protein
3.06
 GRMZM2G302245
 Zheng, HY et al. 2016. Plant Cell Physiol pp.doi: 10.1093/pcp/pcw195     Reference: November 18th, 2016
Variation: March 28th, 2018
Gene Model: March 28th, 2018
24 days agophi453121a  : similar to Arabidopsis E3 ubiquitin-protein ligase SINAT3
3.00
        Variation: March 28th, 2018
25 days agotls1 tasselless1: encodes an aquaporin; plants generally lack tassels, have ear shoots but ear development is variable ranging from no seed set to a few kernels on a small ball-shaped cob; in some backgrounds, pubescent, leathery at 4-8 leaf stage; similar to bs1 of Woodworth and Micu. Phenotypes corrected by boron spraying (Leonard et al 2014).
1.11 - 1.12
 GRMZM2G176209
 Matthes, MS et al. 2018. Physiol Plant pp.doi: 10.1111/ppl.12717     Reference: March 27th, 2018
Gene Product: April 3rd, 2014
Variation: July 29th, 2014
Gene Model: April 2nd, 2014
25 days agoks3 kaurene synthase3: functionality inferred from expression data and sequence similarity (Song et al 2011; Nelissen et al 2012)
2.02
 GRMZM2G093603
 Lu, XD et al. 2018. Molecular Plant pp.doi: 10.1016/j.molp.2017.11.013     Reference: March 27th, 2018
Gene Product: August 16th, 2012
Gene Model: August 15th, 2012
27 days agomc1 mucronate1: dominant Mc1 kernels have opaque endospermendosperm-specific protein cDNA
2.06
 GRMZM2G518638
 Li, XX et al. 2018. Plant J pp.doi: 10.1111/tpj.13907     Reference: March 25th, 2018
Gene Product: September 17th, 2010
Variation: September 16th, 2010
Gene Model: July 8th, 2013
27 days agodzs10 delta zein structural10: [was Zps10/(22)]; high (22.5%) methionine 10kDa delta zein; RFLP (probe 10kZ-1)
9.03 - 9.03
    Li, XX et al. 2018. Plant J pp.doi: 10.1111/tpj.13907     Reference: March 25th, 2018
Gene Product: September 1st, 2003
Variation: November 21st, 2012
27 days agozp15 zein protein, 15kDa15: high methionine; genomic blot indicates one or two copies
6.01 - 6.02
 GRMZM2G086294
 Li, XX et al. 2018. Plant J pp.doi: 10.1111/tpj.13907     Reference: March 25th, 2018
Gene Product: July 8th, 2013
Variation: August 27th, 2013
Gene Model: July 8th, 2013
27 days agozp27 27-kDa zein protein: proline rich; least abundant of zeins in endosperm, not clear if all in zp27 cluster
7.02
    Li, XX et al. 2018. Plant J pp.doi: 10.1111/tpj.13907     Reference: March 25th, 2018
Gene Product: September 17th, 2010
Variation: September 16th, 2010
27 days agodzs18 delta zein structural18: high (26%) methionine 18 kDa delta zein, similar to dzs10
6.04
    Li, XX et al. 2018. Plant J pp.doi: 10.1111/tpj.13907     Reference: March 25th, 2018
Gene Product: September 1st, 2003
Variation: February 16th, 2014
27 days agogz50 50kD gamma zein: endosperm-specific protein cDNA
7.02
 GRMZM2G138689
 Li, XX et al. 2018. Plant J pp.doi: 10.1111/tpj.13907     Reference: March 25th, 2018
Gene Product: September 22nd, 2010
Variation: September 16th, 2010
Gene Model: November 21st, 2014
29 days agocsu845  :
3.09
 GRMZM2G364528
     Variation: September 1st, 2003
Gene Model: March 23rd, 2018
29 days agocsu636  :
3.05
 GRMZM2G359505
     Variation: September 1st, 2003
Gene Model: March 23rd, 2018
29 days agoga1 gametophyte factor1: (was ga9) Ga1 pollen grains are competitively superior to ga1 on Ga1 silks; Ga1-S (strong) super-gametophyte
4.02 - 4.03
    Jones, ZG; Goodman, MM. 2018. Crop Sci 58:doi: 10.2135/cropsci2017.09.0560     Reference: March 23rd, 2018
Variation: June 22nd, 2005
29 days agoga2 gametophyte factor2: Ga2 pollen grains are competitively superior to ga2 on Ga2 silks.
5.04
    Jones, ZG; Goodman, MM. 2018. Crop Sci 58:doi: 10.2135/cropsci2017.09.0560     Reference: March 23rd, 2018
Variation: September 29th, 2016
29 days agommc0022  :
3.05
 GRMZM5G832175
     Variation: September 1st, 2003
Gene Model: March 23rd, 2018
29 days agommc0132  :
3.04
 GRMZM2G134178
     Variation: September 1st, 2003
Gene Model: March 23rd, 2018
29 days agommc0312a  : similar to Arabidopsis P-loop containing nucleoside triphosphate hydrolase-like protein
3.04
 GRMZM2G018951
     Variation: September 1st, 2003
Gene Model: March 23rd, 2018
29 days agotcb1 teosinte crossing barrier1: Barrier to crossing of maize onto Central Plateau teosinte - transferred to maize with linked positive modifiers, fails to accept any pollen, including Ga1-s
4.04
    Jones, ZG; Goodman, MM. 2018. Crop Sci 58:doi: 10.2135/cropsci2017.09.0560     Reference: March 23rd, 2018
Variation: May 19th, 2006
29 days agohac101a  :
3.04
 GRMZM2G069886
     Gene Product: November 6th, 2003
Variation: September 1st, 2003
Gene Model: March 23rd, 2018
29 days agoatx4 arabidopsis trithorax homolog4:
3.01
 GRMZM2G085176
 Chen, LQ et al. 2017. Plant Physiol 174:1795-1806   AT4G27910 (TAIR)
LOC_Os01g11952 (MSU/TIGR) 		Reference: June 29th, 2017
Gene Product: June 30th, 2017
Gene Model: March 23rd, 2018
29 days agorafs1 raffinose synthase1: mutants have significantly reduced seed vigor
3.03
 GRMZM2G150906
 Li, T et al. 2017. Molecular Plant 10:1540-1555     Reference: March 1st, 2018
Variation: March 23rd, 2018
Gene Model: March 23rd, 2018
30 days agobnlg197  :
3.06
 GRMZM5G851026
     Variation: September 1st, 2003
Gene Model: March 22nd, 2018
30 days agobnlg1601  : similar to Arabidopsis Sterile alpha motif (SAM) domain-containing protein
3.05
 GRMZM2G081935
     Variation: September 1st, 2003
Gene Model: March 22nd, 2018
30 days agobnlg1638  :
3.04
 GRMZM2G104829
     Variation: September 1st, 2003
Gene Model: March 22nd, 2018
30 days agowrky27 WRKY-transcription factor 27: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.02
 GRMZM2G475984
 Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Variation: September 1st, 2003
Gene Model: March 22nd, 2018
30 days agobnlg1754  :
3.09
 GRMZM2G087769
     Variation: September 1st, 2003
Gene Model: March 22nd, 2018

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