Newly Characterized Genes

CHECK HERE FOR DESCRIPTIONS OF NEWLY CHARACTERIZED MAIZE GENES!

With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.

MaizeGDB prefers not to assign formal gene names to gene models based purely on orthology. Known difficulties include inclusivity (there are over 10,000 functionally characterized Arabidopsis genes)* and some likelihood of errors in inferred functions. Unlike gene models, gene names are generally conserved unless differently named genes are found to be allelic. Of particular note, naming priveleges are customarily held by researchers who first confirm function.

We encourage researchers to use the annotation tool on the MaizeGDB gene model pages to add their insights about putative function, especially when not currently part of the Phytozome or Gramene pipelines.

Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.

If you cannot find the gene you would like to recommend in the database, send us an email so that we can add it to the database!

This page is based on our monthly release. The updates are made around 4:00am CST.


         Recommended Genes


One month | Six months | One year | All time

New or updated genes since one month ago. The cutoff date is November 11th, 2019.

Last UpdateGeneFull Name : DescriptionChromosome
or Bin
Gene
Model
Recent ReferenceOrthologsUpdate information
yesterdayzp27 27-kDa zein protein: proline rich; least abundant of zeins in endosperm, not clear if all in zp27 cluster
7.02
   Liu, HJ et al. 2019. Comm Biol 2:460     Reference: December 10th, 2019
Gene Product: September 17th, 2010
Variation: December 10th, 2019
yesterdayhak1 potassium high-affinity transporter1:
2.04
GRMZM2G093826
Zhang, M et al. 2019. Nature Plants 5:1297-1308     Reference: December 10th, 2019
Gene Product: December 15th, 2018
Gene Model: February 23rd, 2018
yesterdaygz50 50kD gamma zein: endosperm-specific protein cDNA
7.02
GRMZM2G138689
Liu, HJ et al. 2019. Comm Biol 2:460     Reference: December 10th, 2019
Gene Product: September 22nd, 2010
Variation: September 16th, 2010
Gene Model: November 21st, 2014
yesterdaync1 Na+ content1: loss-of-function allele confers increased accumulation of Na+ in leaves, and salt hypersensitivity.
 
GRMZM2G047616
Zhang, M et al. 2019. Nature Plants 5:1297-1308     Reference: December 10th, 2019
Gene Product: November 15th, 2017
Variation: November 15th, 2017
Gene Model: November 15th, 2017
yesterdaync2 Na+ content2:
 
GRMZM2G135674
Zhang, M et al. 2019. Nature Plants 5:1297-1308     Reference: December 10th, 2019
Gene Product: November 15th, 2017
Gene Model: November 15th, 2017
yesterdaysksc1 silk scar color1:
 
   Stinard, PS. 2017. MNL 91     Reference: March 21st, 2018
Variation: December 10th, 2019
yesterdaycopt1 copper transporter1:
 
GRMZM2G003179
Liu, HJ et al. 2019. Comm Biol 2:460     Reference: December 10th, 2019
Gene Product: July 24th, 2018
Gene Model: July 24th, 2018
yesterdayhak5 potassium high-affinity transporter5: mutants exhibit reduced K uptake and inhibited seedling growth
 
GRMZM2G084779
Zhang, M et al. 2019. Nature Plants 5:1297-1308     Reference: December 10th, 2019
Gene Product: December 15th, 2018
Variation: December 15th, 2018
Gene Model: December 15th, 2018
yesterdaysmc2 structural maintenance of chromosomes2: essential for proper chromosome segregation and for H3 phosphorylation at Serine 10 (H3S10ph) at pericentromeres during mitotic division.
 
GRMZM2G006452
Wang, HF et al. 2019. Plant J pp.doi: 10.1111/tpj.14639   AT3G47460 (TAIR) Reference: December 10th, 2019
Gene Product: December 10th, 2019
Gene Model: December 10th, 2019
yesterdayhak4 high-affinity potassium transporter4: encodes a Na+-selective transporter
 
GRMZM2G425999
Zhang, M et al. 2019. Nature Plants 5:1297-1308     Reference: December 10th, 2019
Gene Product: December 15th, 2018
Gene Model: December 10th, 2019
yesterdaysmc4 structural maintenance of chromosomes4: essential for proper chromosome segregation and for H3 phosphorylation at Serine 10 (H3S10ph) at pericentromeres during mitotic division.
6.06
GRMZM2G383623
Wang, HF et al. 2019. Plant J pp.doi: 10.1111/tpj.14639   AT5G48600 (TAIR) Reference: December 10th, 2019
Gene Product: December 10th, 2019
Gene Model: December 10th, 2019
2 days agobap2 basal layer antifungal protein2: cDNA, multiple copies; antifungal activity; basal endosperm cell specific
4.05
   Zhang, XX et al. 2019. Mol Genet Genomics pp.doi: 10.1007/s00438-019-01631-2     Reference: December 9th, 2019
Gene Product: September 1st, 2003
Variation: September 1st, 2003
2 days agotcrr1 transfer cell response regulator1: basal endosperm transfer cell specific transcript; encoded protein is found other cells, the conducting cells above the transfer layer, and immature cells adjacent to the transfer layer
4.05
GRMZM2G016145
Zhang, XX et al. 2019. Mol Genet Genomics pp.doi: 10.1007/s00438-019-01631-2     Reference: December 9th, 2019
Variation: December 31st, 2015
Gene Model: December 31st, 2015
2 days agosweet4c sugars will eventually be exported transporter4c: Mutants are defective in seed filling
5.04
GRMZM2G137954
Zhang, XX et al. 2019. Mol Genet Genomics pp.doi: 10.1007/s00438-019-01631-2   LOC_Os02g19820 (MSU/TIGR) Reference: December 9th, 2019
Gene Product: November 4th, 2015
Variation: November 3rd, 2015
Gene Model: November 3rd, 2015
2 days agode18 defective18: Defective kernel: seed weight less than half of normal (B37) (Torti et al. 1984)
10.03
GRMZM2G091819
Zhang, XX et al. 2019. Mol Genet Genomics pp.doi: 10.1007/s00438-019-01631-2     Reference: December 9th, 2019
Gene Product: June 18th, 2018
Variation: January 21st, 2016
Gene Model: September 11th, 2012
2 days agodek36 defective kernel36: mutant kernels have a small and collapsed appearance at maturity, with a drastic size reduction in both embryo and endosperm; encodes an E+ subgroup PPR protein
 
GRMZM5G892151
Zhang, XX et al. 2019. Mol Genet Genomics pp.doi: 10.1007/s00438-019-01631-2   At4g21300 (TAIR) Reference: December 9th, 2019
Gene Product: December 27th, 2016
Variation: March 13th, 2017
Gene Model: March 13th, 2017
4 days agomlks2 Maize LINC KASH AtSINE-like2: required for normal male meiosis and pollen development and normal stomatal complex development
 
GRMZM2G000608
Gumber, HK, et al. 2019. Nucleus. 10:144-166     Reference: June 27th, 2019
Gene Product: December 7th, 2019
Variation: June 22nd, 2019
Gene Model: June 7th, 2018
4 days agoarm4 armadillo domain protein4: Mutant kernels are smaller and less plump; encodes an armadillo domain protein
4.10
GRMZM2G019284
Kong, MS et al. 2019. Plant Breed pp.doi: 10.1111/pbr.12786   At1G32260 (TAIR) Reference: December 7th, 2019
Gene Product: December 7th, 2019
Variation: December 7th, 2019
Gene Model: December 7th, 2019
5 days agocchh1 Cys2His2 Zinc Finger1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
8.05
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 6th, 2019
5 days agocchh35 Cys2His2 Zinc Finger35: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
10.02
GRMZM2G068710
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 6th, 2019
Gene Model: January 23rd, 2018
5 days agozfp30 putative zinc finger protein30:
4.09
GRMZM2G116079
    Gene Product: December 6th, 2019
Variation: May 19th, 2015
Gene Model: May 19th, 2015
5 days agocchh133 Cys2His2 Zinc Finger133: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 6th, 2019
5 days agocchh2 Cys2His2 Zinc Finger2: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 6th, 2019
5 days agocchh25 Cys2His2 Zinc Finger25: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 6th, 2019
5 days agocchh26 Cys2His2 Zinc Finger26: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 6th, 2019
5 days agocchh4 Cys2His2 Zinc Finger4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 6th, 2019
5 days agocchh46 Cys2His2 Zinc Finger46: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 6th, 2019
5 days agocchh5 Cys2His2 Zinc Finger5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 6th, 2019
5 days agoznf2 Zinc finger nuclease2: located between sh1 and bz1 (Hawkins et al., 2014)
9.01
GRMZM2G478553
Hawkins, JS et al. 2014. Plant J 79:375-384     Reference: September 25th, 2015
Gene Product: December 6th, 2019
Variation: September 25th, 2015
Gene Model: September 25th, 2015
5 days agoocl4 outer cell layer4:
1.05 - 1.06
   van der Linde, K; Walbot, V. 2019. Current Topics in Developmental Biology 131:239-256     Reference: January 8th, 2019
Gene Product: September 1st, 2003
Variation: December 6th, 2019
5 days agorzfl1 RING zinc finger protein-like1:
9.06
   Alexandrov, NN, et al. 2009. Plant Mol Biol. 69:179-194     Reference: January 11th, 2009
Gene Product: December 6th, 2019
Variation: September 25th, 2007
5 days agotsh1 tassel sheath1: leaves develop at base of tassel branches and spikelet pairstsh1 was positionally cloned by Whipple et al, 2010. It was initially mapped between umc2059 and bnlg1740. The position was narrowed using a larger population, synteny with rice provided two candidate genes, one was selected based on sequencing differences from progenitors for three independent EMS alleles.
6.07
   Xu, GH, et al. 2017. New Phytol. 0:doi: 10.1111/nph.14400     Reference: February 3rd, 2017
Gene Product: December 6th, 2019
Variation: October 6th, 2011
5 days agorhcp1 ring hc protein1: expressed during brace root initiation and regulated by abiotic stresses.
 
GRMZM2G024690
Li, W-L et al. 2017. J Integrative Agric 16: 60345-60347     Reference: April 3rd, 2017
Gene Product: December 6th, 2019
Variation: April 3rd, 2017
Gene Model: April 3rd, 2017
5 days agoznfn1 zinc finger protein1:
 
GRMZM2G086277
  At5g52010 (TAIR)
LOC_Os06g07020 (MSU/TIGR)
Gene Product: December 6th, 2019
Gene Model: May 21st, 2017
5 days agoznf3 zinc finger protein3:
 
AC206217.2_FG006
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: December 6th, 2019
Gene Model: July 5th, 2019
5 days agoznf4 zinc finger protein4:
 
GRMZM2G048154
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: December 6th, 2019
Gene Model: June 5th, 2017
5 days agoznf5 zinc finger protein5:
 
GRMZM2G001205
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: December 6th, 2019
Gene Model: June 5th, 2017
5 days agoznf6 zinc finger protein6:
 
GRMZM5G804618
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: December 6th, 2019
Gene Model: June 5th, 2017
5 days agocchh6 Cys2His2 Zinc Finger6:
 
AC205250.3_FG004
Su, HH et al. 2018. J Exp Bot pp.doi: 10.1093/jxb/ery299     Reference: August 23rd, 2018
Gene Product: December 6th, 2019
Gene Model: August 23rd, 2018
5 days agotin1 tiller number1: variant has multiple tillers
 
GRMZM2G059088
Zhang, X et al. 2019. Nature communications 10:5608     Reference: December 6th, 2019
Gene Product: December 6th, 2019
Variation: December 6th, 2019
Gene Model: December 6th, 2019
5 days agocchh3 Cys2His2 Zinc Finger3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.05
GRMZM2G023988
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 6th, 2019
Gene Model: January 23rd, 2018
5 days agocchh7 Cys2His2 Zinc Finger7:
7.01
GRMZM2G144645
Li, CB et al. 2018. Plant Cell pp.doi: 10.1105/tpc.18.00422     Reference: September 24th, 2018
Gene Product: December 6th, 2019
Gene Model: September 24th, 2018
7 days agopep1 phosphoenolpyruvate carboxylase1: cytosolic C4 isozyme; single copy, similar to C3-PEPCase genes; cDNA complements E. coli mutant; genomic and partial amino acid sequences compare; SSR phi065
9.03
   Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629     Reference: December 4th, 2019
Gene Product: September 1st, 2003
Variation: May 11th, 2018
7 days agocsu173  : single copy, novel leaf cDNA sequence
5.05
   Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629     Reference: December 4th, 2019
Variation: September 1st, 2003
7 days agopsbA (cp)  :
 
   Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629     Reference: December 4th, 2019
Gene Product: September 1st, 2003
7 days agopdrp1 PDK regulatory protein1: encodes a bifunctional protein with two activities; phosphotransferase and protein kinase
2.07
GRMZM2G131286
Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629     Reference: December 4th, 2019
Gene Product: July 28th, 2014
Gene Model: July 28th, 2014
7 days agoatp4 ATP synthase4: Chloroplast PPR-SMR protein. Activates atpB translation. Binds atpB 5'UTR. (A. Barkan, 2015)required for normal accumulation of the chloroplast ATP synthase
 
GRMZM2G128665
Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629     Reference: December 4th, 2019
Gene Product: December 30th, 2015
Variation: June 15th, 2013
Gene Model: June 15th, 2013
7 days agoemb17 embryo defective17: in mutants, embryogenesis is arrested at or before transition stage; encodes plastid initiation factor 3
 
GRMZM2G119691
Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629     Reference: December 4th, 2019
Gene Product: March 8th, 2013
Variation: August 15th, 2013
Gene Model: March 8th, 2013
7 days agoks2 kaurene synthase2:
 
GRMZM2G093526
Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629     Reference: December 4th, 2019
Gene Product: August 16th, 2012
Gene Model: October 27th, 2014
7 days agoatpc2 ATP synthase chloroplast subunit2: chloroplast ATP synthase (ATPC); gamma subunit based on similarity to Arabidopsis atpc1 (Belcher et al 2015)
 
GRMZM2G048907
Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629     Reference: December 4th, 2019
Gene Product: July 17th, 2006
Variation: December 30th, 2015
Gene Model: February 17th, 2015
7 days agocp33b chloroplast RNA-binding protein33b: plastid-specific 30S ribosomal protein
 
GRMZM2G090271
Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629   AT2G35410 (TAIR) Reference: December 4th, 2019
Variation: December 4th, 2019
Gene Model: December 4th, 2019
7 days agoriba3 monofunctional riboflavin biosynthesis proteinA3: riboflavin biosynthesis protein ribAB
 
GRMZM2G336908
Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629   AT5G59750 (TAIR) Reference: December 4th, 2019
Variation: December 4th, 2019
Gene Model: December 4th, 2019
7 days agoIDP644  :
1.07
GRMZM2G025855
Watkins, KP et al. 2019. Plant J pp.doi: 10.1111/tpj.14629     Reference: December 4th, 2019
Variation: March 31st, 2005
Gene Model: February 14th, 2019
7 days agoIDP447  :
6.00
GRMZM5G871143
    Variation: March 31st, 2005
Gene Model: December 4th, 2019
8 days agoos1 opaque-endosperm, small germ1: opaque crown; kernel larger, lighter color; viable; reduced oil content
2.00 - 2.04
   Song, WB et al. 2018. J Integr Plant Biol pp.doi: 10.1111/jipb.12755     Reference: December 7th, 2018
Gene Product: December 3rd, 2019
Variation: December 6th, 2018
8 days agonlp1 NLP-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 3rd, 2019
8 days agonlp10 NLP-transcription factor 10: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 3rd, 2019
8 days agonlp11 NLP-transcription factor 11: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 3rd, 2019
8 days agonlp12 NLP-transcription factor 12: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 3rd, 2019
8 days agonlp13 NLP-transcription factor 13: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ge, M et al. 2018. Plant Growth Regulation 84:95-105     Reference: December 3rd, 2019
Gene Product: December 3rd, 2019
8 days agonlp14 NLP-transcription factor 14: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 3rd, 2019
8 days agonlp16 NLP-transcription factor 16: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Wang, YL et al. 2019. Mol Genet Genomics pp.doi: 10.1007/s00438-019-01586-4     Reference: July 10th, 2019
Gene Product: December 3rd, 2019
8 days agonlp17 NLP-transcription factor 17: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ge, M et al. 2018. Plant Growth Regulation 84:95-105     Reference: December 3rd, 2019
Gene Product: December 3rd, 2019
8 days agoshai1 shohai1: loss of function mutants cause variable morphological defects in the embryo including small scutellum, shoot axis bifurcation and arrest during early organogenesis
 
   Mimura, M et al. 2018. Plant J pp.doi: 10.1111/tpj.13996     Reference: June 15th, 2018
Gene Product: December 3rd, 2019
Variation: June 15th, 2018
8 days agonlp3 NLP-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ge, M et al. 2018. Plant Growth Regulation 84:95-105     Reference: December 3rd, 2019
Gene Product: December 3rd, 2019
8 days agonlp4 NLP-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ge, M et al. 2018. Plant Growth Regulation 84:95-105     Reference: December 3rd, 2019
Gene Product: December 3rd, 2019
8 days agonlp5 NLP-transcription factor 5: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 3rd, 2019
8 days agonlp6 NLP-transcription factor 6: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ge, M et al. 2018. Plant Growth Regulation 84:95-105     Reference: December 3rd, 2019
Gene Product: December 3rd, 2019
8 days agonlp8 NLP-transcription factor 8: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ge, M et al. 2018. Plant Growth Regulation 84:95-105     Reference: December 3rd, 2019
Gene Product: December 3rd, 2019
8 days agonlp9 NLP-transcription factor 9: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
10.04
GRMZM2G105004
Ge, M et al. 2018. Plant Growth Regulation 84:95-105     Reference: December 3rd, 2019
Gene Product: December 3rd, 2019
Variation: July 29th, 2004
Gene Model: October 21st, 2018
8 days agonlp7 NLP-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.01
GRMZM2G109509
Ge, M et al. 2018. Plant Growth Regulation 84:95-105     Reference: December 3rd, 2019
Gene Product: December 3rd, 2019
Gene Model: October 7th, 2017
8 days agonrt1 nitrate transport1:
 
GRMZM2G010251
Ge, M et al. 2018. Plant Growth Regulation 84:95-105     Reference: December 3rd, 2019
Gene Product: September 1st, 2003
Gene Model: September 10th, 2014
8 days agonlp15 NLP-transcription factor 15: involved in modulating the nitrogen responseLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.03
GRMZM2G042278
Ge, M et al. 2019. Plant J pp.doi: 10.1111/tpj.14628     Reference: December 3rd, 2019
Gene Product: December 3rd, 2019
Variation: December 3rd, 2019
Gene Model: October 7th, 2017
10 days agoumc1378  :
7.00
GRMZM2G333337
    Variation: September 1st, 2003
Gene Model: December 1st, 2019
10 days agorpl5a 60S ribosomal protein L5-1 homolog a: endosperm cDNA 5C05D11 (uaz189), similar to ribosomal protein
3.05
GRMZM5G815894
Helentjaris, T et al. 1994. MNL 68:101-104     Reference: September 1st, 2003
Gene Product: December 1st, 2019
Variation: April 9th, 2011
Gene Model: December 28th, 2016
10 days agorpl5b 60S ribosomal protein L5-1 homolog b:
 
GRMZM2G163081
    Gene Product: December 1st, 2019
Variation: April 9th, 2011
Gene Model: July 28th, 2016
10 days agorpl5c 60S ribosomal protein L5, mitochondrial-like homolog c:
 
GRMZM5G831780
    Gene Product: December 1st, 2019
Gene Model: December 1st, 2019
15 days agocsu204(uce)  :
8.04
GRMZM2G007276
Baysdorfer, C. 1994. cDNA sequence submission to dbEST     Reference: September 1st, 2003
Gene Product: November 26th, 2019
Gene Model: August 30th, 2019
15 days agouce3 ubiquitin conjugating enzyme3:
1.01
GRMZM2G070047
Wills, DM et al. 2017. J Hered pp.doi: 10.1093/jhered/esx073     Reference: September 8th, 2017
Gene Product: November 26th, 2019
Variation: February 15th, 2015
Gene Model: February 16th, 2015
15 days agocsu456(uce)  :
3.08
GRMZM5G814314
    Gene Product: November 26th, 2019
Gene Model: November 26th, 2019
15 days agocsu591(uce)  :
8.08
GRMZM5G866947
    Gene Product: November 26th, 2019
Gene Model: November 26th, 2019
15 days agocsu694a(uce)  :
9.04
GRMZM2G163398
Figueroa, D; Bass, HW. 2012. Cell Chromosome Res. 20:363-80     Reference: July 18th, 2014
Gene Product: November 26th, 2019
Gene Model: November 26th, 2019
15 days agouce8 ubiquitin conjugating enzyme8:
5.03
GRMZM2G146374
    Gene Product: November 26th, 2019
Variation: August 23rd, 2017
Gene Model: August 23rd, 2017
15 days agouce13 ubiquitin conjugating enzyme13:
 
GRMZM2G085600
de Vries, A et al. 1998. Plant Physiol 118:1101   AT5G59300 (TAIR) Reference: September 1st, 2003
Gene Product: November 26th, 2019
Gene Model: November 26th, 2019
15 days agouce5 ubiquitin conjugating enzyme5:
1.10
GRMZM2G022859
Winkler, RG and Helentjaris, T. 1993. MNL 67:110-111     Reference: September 1st, 2003
Gene Product: November 26th, 2019
Variation: September 16th, 2016
Gene Model: September 16th, 2016
15 days agoxer1 xerico1: encodes a RING finger domain type E3 ubiquitin ligaseOver-expression improves water use efficiency and drought tolerance in transgenic maize plants through reduction in ABA8OX proteins stability and ABA degradation.
2.07
GRMZM2G018070
Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: November 26th, 2019
Gene Model: September 14th, 2017
15 days agouce1 ubiquitin conjugating enzyme1: endosperm cDNA 2C06C11 (uaz102), similar to plant ubiquitin conjugating enzymes
1.08
GRMZM2G007381
Helentjaris, T et al. 1994. MNL 68:101-104     Reference: September 1st, 2003
Gene Product: November 26th, 2019
Variation: August 23rd, 2017
Gene Model: August 23rd, 2017
15 days agoupl1 ubiquitin-protein ligase1: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
2.07
GRMZM2G080439
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: February 14th, 2018
15 days agouce4 ubiquitin conjugating enzyme4:
2.01
   Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: November 26th, 2019
Variation: July 29th, 2004
15 days agouce2 ubiquitin conjugating enzyme2:
9.01
GRMZM2G177276
Hawkins, JS et al. 2014. Plant J 79:375-384     Reference: September 25th, 2015
Gene Product: November 26th, 2019
Gene Model: April 26th, 2014
15 days agopco090876  :
4.08
GRMZM2G111818
    Gene Product: November 26th, 2019
Gene Model: November 26th, 2019
15 days agouce6 ubiquitin conjugating enzyme6:
 
GRMZM2G018447
    Gene Product: November 26th, 2019
Variation: August 23rd, 2017
Gene Model: July 7th, 2017
15 days agouce7 ubiquitin conjugating enzyme7:
 
GRMZM2G053764
    Gene Product: November 26th, 2019
Variation: August 23rd, 2017
Gene Model: August 23rd, 2017
15 days agoxer3 xerico3: encodes a RING finger domain type E3 ubiquitin ligase
 
GRMZM2G005840
Shi, QB et al. 2019. Biochem Biophys Res Commun pp.doi: 10.1016/j.bbrc.2019.05.142     Reference: June 17th, 2019
Gene Product: November 26th, 2019
Variation: September 14th, 2017
Gene Model: September 14th, 2017
15 days agoxer2 xerico2: encodes a RING finger domain type E3 ubiquitin ligase
 
GRMZM2G393349
Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: November 26th, 2019
Gene Model: September 14th, 2017
15 days agoxer4 xerico4: encodes a RING finger domain type E3 ubiquitin ligase
 
GRMZM2G029623
Brugiere, N et al. 2017. Plant Physiol pp.doi: 10.1104/pp.17.01072     Reference: September 14th, 2017
Gene Product: November 26th, 2019
Gene Model: September 14th, 2017
15 days agouce9 ubiquitin conjugating enzyme9:
 
GRMZM2G027378
Dechorgnat, J et al. 2018. Frontiers Plant Sci 9:531     Reference: May 10th, 2018
Gene Product: November 26th, 2019
Gene Model: May 10th, 2018
15 days agouce10 ubiquitin conjugating enzyme10:
 
GRMZM2G381709
Du, QG et al. 2018. Plant Physiol pp.doi: 10.1104/pp.18.00034   AT2G33770 (TAIR) Reference: July 2nd, 2018
Gene Product: November 26th, 2019
Gene Model: July 2nd, 2018
15 days agouce11 ubiquitin conjugating enzyme11:
 
GRMZM2G464572
Du, QG et al. 2018. Plant Physiol pp.doi: 10.1104/pp.18.00034   AT2G33770 (TAIR) Reference: July 2nd, 2018
Gene Product: November 26th, 2019
Gene Model: July 2nd, 2018
15 days agoupl2 ubiquitin-protein ligase2: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
GRMZM2G049141
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: November 19th, 2019
15 days agoupl3 ubiquitin-protein ligase3: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
GRMZM2G411536
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: November 19th, 2019
15 days agoupl4 ubiquitin-protein ligase4: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
GRMZM2G461948
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: November 19th, 2019
15 days agoupl5 ubiquitin-protein ligase5: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
GRMZM2G034622
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: November 19th, 2019
15 days agoupl6 ubiquitin-protein ligase6: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
GRMZM2G124297
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: November 19th, 2019
15 days agoupl7 ubiquitin-protein ligase7: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
GRMZM2G380619
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: November 19th, 2019
15 days agoupl8 ubiquitin-protein ligase8: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
   Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
15 days agoupl9 ubiquitin-protein ligase9: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
GRMZM2G021299
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: November 19th, 2019
15 days agoupl10 ubiquitin-protein ligase10: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
GRMZM2G328988
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: November 19th, 2019
15 days agoupl11 ubiquitin-protein ligase11: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
GRMZM2G101098
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: November 19th, 2019
15 days agoupl12 ubiquitin-protein ligase12: encodes a HECT (homologous to the E6AP carboxyl terminus) domain E3 ubiquitin ligase
 
GRMZM2G331368
Li, YF et al. 2019. Genetica pp.doi: 10.1007/s10709-019-00080-4     Reference: November 19th, 2019
Gene Product: November 26th, 2019
Gene Model: November 19th, 2019
15 days agouce14 ubiquitin conjugating enzyme14:
 
GRMZM2G074479
    Gene Product: November 26th, 2019
Gene Model: November 26th, 2019
15 days agouce12 ubiquitin conjugating enzyme12:
8.03
GRMZM2G015287
Zhu, X-M et al. 2018. Frontiers Plant Sci 9:966     Reference: July 25th, 2018
Gene Product: November 26th, 2019
Variation: March 31st, 2005
Gene Model: July 25th, 2018
16 days agoinvinh1 invertase inhibitor1: Interacts with incw5 (Zhao et al., 2019)
 
GRMZM2G162447
Filyushin, MA et al. 2019. Russ J Genet 55:1438-1444     Reference: November 25th, 2019
Gene Product: August 7th, 2019
Gene Model: August 7th, 2019
19 days agots6 tasselseed6: Recessive alleles have more than two florets per spikelet, and reversed germ orientation. Dominant Ts6 tassels are compact, pistillate to mixed and ears have irregular kernel placement.
1.11
GRMZM5G862109
Wang, J et al. 2019. New Phytol pp.doi: 10.1111/nph.15890     Reference: November 22nd, 2019
Gene Product: July 5th, 2019
Variation: December 4th, 2013
Gene Model: July 14th, 2011
Recommended by George Chuck:
September 25th, 2007
19 days agovpp2 vacuolar proton pump2: etiolated leaf cDNA, 5' sequence similar to plant vacuolar ATPase, subunit B
9.03
GRMZM2G094497
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Gene Product: September 1st, 2003
Variation: May 15th, 2015
Gene Model: May 15th, 2015
19 days agorf2 restorer of fertility2: see rf1; cDNA prf2a complements E. coli mutant deficient in aldehyde dehydrogenase; mitochondrial
9.03
   Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Gene Product: September 1st, 2003
Variation: December 18th, 2006
19 days agocdo202a(mcf)  : similar to Arabidopsis adenine nucleotide transporter 1
6.07
GRMZM2G067877
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Variation: August 30th, 2018
Gene Model: August 30th, 2018
19 days agoumc1170  :
9.02
GRMZM2G016323
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Variation: September 1st, 2003
Gene Model: March 7th, 2018
19 days agopdk1 pyruvate, orthophosphate dikinase1: cDNA, genomic and peptide sequences; microsatellite mapped (SSRs phi025, phi078, phi081; nc012 ); cytosolic or plastidic, dependent on transcript processingmutant seedlings are pale green and lethal once kernel reserves are exhaused, even when plants were grown under 2% CO2
6.05
GRMZM2G306345
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Gene Product: July 28th, 2014
Variation: April 18th, 2018
Gene Model: November 21st, 2012
19 days agomate1 multidrug and toxic compound extrusion1: confers aluminum tolerance in lines that carry 3 adjacent identical copies of the mate1 gene (Maron et al 2013)
 
GRMZM5G870170
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Gene Product: August 17th, 2015
Variation: March 19th, 2013
Gene Model: March 19th, 2013
19 days agome2 NADP-dependent malic enzyme2: cDNA in roots, preprotein contains chloroplast transit peptide sequences and is imported and processed; C3-like enzyme
6.05
GRMZM2G122479
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Gene Product: June 27th, 2019
Variation: August 24th, 2014
Gene Model: August 21st, 2014
19 days agosut7 sucrose transporter7: single copy cDNA; transcripts observed in mature leaf blades of young plants, and at reproductive stage in various tissues including leaf sheaths, culms, husks, pedicels, with little transcript detected in silks and developing kernels.
9.07
GRMZM2G087901
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Gene Product: September 14th, 2013
Variation: April 13th, 2017
Gene Model: April 17th, 2013
19 days agoAY110260  :
6.05
GRMZM2G319109
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Variation: September 25th, 2007
Gene Model: August 27th, 2018
19 days agomstr4 monosaccharide transporter4:
9.04
GRMZM2G034061
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Variation: July 14th, 2008
Gene Model: September 17th, 2015
19 days agoels5 early leaf senescence5: mutant has an early leaf senescence phenotype
 
   Chai, M et al. 2019. Genes 10: 944     Reference: November 22nd, 2019
Variation: November 22nd, 2019
19 days agopco093173  :
6.06
GRMZM2G044137
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Variation: September 25th, 2007
Gene Model: November 22nd, 2019
19 days agoAY107496  :
9.01
   Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Variation: September 25th, 2007
19 days agotk1 transketolase 1:
9.03
GRMZM2G033208
Dong, ZB et al. 2018. Nucl Acid Res 46:5012-5028     Reference: November 22nd, 2019
Gene Product: March 11th, 2008
Variation: January 29th, 2011
Gene Model: December 21st, 2015
20 days agod1 dwarf plant1: andromonoecious, short, compact plants; responds to gibberellins; d1-t intermediate in height
3.03
GRMZM2G036340
Knauer, S et al. 2019. Genome Res pp.doi: 10.1101/gr.250878.119     Reference: November 21st, 2019
Gene Product: October 25th, 2014
Variation: October 30th, 2014
Gene Model: October 2nd, 2012
20 days agoglb1 globulin1: was prot1; electrophoretic mobility, null allele is known; embryo protein; SSRs phi011, 055, 094
1.09
   Zheng, XX, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.19.00444     Reference: November 21st, 2019
Gene Product: September 1st, 2003
Variation: January 29th, 2015
20 days agoglb2 globulin2: presence-absence
1.11
   Zheng, XX, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.19.00444     Reference: November 21st, 2019
Gene Product: September 1st, 2003
Variation: March 30th, 2009
20 days agovp1 viviparous1: embryo fails to become dormant, viable if transplanted; some alleles dormant; chlorophyll and carotenoids unaffected; anthocyanins in aleurone suppressed (aka vp4); cDNA
3.05
   Zheng, XX, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.19.00444     Reference: November 21st, 2019
Gene Product: July 29th, 2015
Variation: August 22nd, 2013
20 days agoy9 pale yellow9: pale endosperm, slightly viviparous; green to pale green seedlings and plants; accumulates 9,15,9'-tri-cis-zeta carotene in dark
10.03 - 10.03
GRMZM2G011746
Wurtzel, E; Beltran, J. 2020. Methods in Molecular Biology 2083:53-61     Reference: November 21st, 2019
Gene Product: December 10th, 2011
Variation: September 28th, 2011
Gene Model: September 22nd, 2011
20 days agoesp5 embryo specific protein5: (was Emb5); cDNA clone, embryo specific, ABA responsive, deduced amino acid sequence very hydrophilic and gly/glu-rich (aka emb5)
6.05
GRMZM2G162659
Zheng, XX, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.19.00444     Reference: November 21st, 2019
Variation: September 1st, 2003
Gene Model: July 27th, 2016
20 days agohma3 heavy metal ATPase3: associated with leaf Cd concentration under various Cd levels at seedling and maturing stages
 
GRMZM2G175576
Knauer, S et al. 2019. Genome Res pp.doi: 10.1101/gr.250878.119     Reference: November 21st, 2019
Gene Product: October 23rd, 2019
Variation: November 21st, 2019
Gene Model: January 27th, 2018
20 days agopyl3 pyrabactin resistance-like protein3: plays role in plant drought resistance (He et al., 2018)
 
GRMZM2G154987
Zheng, XX, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.19.00444     Reference: November 21st, 2019
Gene Product: April 21st, 2018
Gene Model: April 21st, 2018
20 days agostk5 serine/threonine-protein kinase5:
 
GRMZM2G334791
Zheng, XX, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.19.00444     Reference: November 21st, 2019
Gene Product: May 13th, 2014
Gene Model: September 19th, 2019
20 days agostiff1 stiff stalk1: mutants have strong stalks
 
GRMZM2G360081
Zhang, ZH, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.19.00486     Reference: November 21st, 2019
Gene Product: July 25th, 2017
Variation: November 5th, 2019
Gene Model: November 5th, 2019
20 days agoGRMZM2G059392  :
 
GRMZM2G059392
Knauer, S et al. 2019. Genome Res pp.doi: 10.1101/gr.250878.119   AT3G53450 (TAIR) Reference: November 21st, 2019
Gene Product: November 21st, 2019
Variation: November 21st, 2019
Gene Model: November 21st, 2019
20 days agoGRMZM2G472643  :
 
GRMZM2G472643
Knauer, S et al. 2019. Genome Res pp.doi: 10.1101/gr.250878.119   AT4G14580 (TAIR) Reference: November 21st, 2019
Variation: November 21st, 2019
Gene Model: November 21st, 2019
20 days agoGRMZM2G050234  :
 
GRMZM2G050234
Knauer, S et al. 2019. Genome Res pp.doi: 10.1101/gr.250878.119     Reference: November 21st, 2019
Variation: November 21st, 2019
Gene Model: November 21st, 2019
20 days agosnrkII11 SnRK2 serine threonine protein kinase 11:
6.05
GRMZM2G063961
Zheng, XX, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.19.00444     Reference: November 21st, 2019
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
20 days agosnrkII2 SnRK2 serine threonine protein kinase2: induced by cold, salt and ABA
7.04
GRMZM2G056732
Zheng, XX, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.19.00444     Reference: November 21st, 2019
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
20 days agosnrkII5 SnRK2 serine threonine kinase5:
10.07
GRMZM2G110908
Zheng, XX, et al. 2019. Plant Cell. 0:doi: 10.1105/tpc.19.00444     Reference: November 21st, 2019
Gene Product: April 14th, 2018
Gene Model: February 11th, 2015
21 days agorap2 rap2.7 orthologue: negative regulator of flowering time; vgt1 acts as an enhancer (Salvi et al. 2007)
8.06
GRMZM2G700665
Ricci, WA et al. 2019. Nature Plants pp.doi: 10.1038/s41477-019-0547-0     Reference: November 20th, 2019
Gene Product: July 5th, 2019
Variation: July 24th, 2019
Gene Model: November 20th, 2012
21 days agotb1 teosinte branched1: many tillers; ear branches tassel-like; affects apical dominanceGRASSIUS: TCP transcription factor (TCP1)
1.09
   Ricci, WA et al. 2019. Nature Plants pp.doi: 10.1038/s41477-019-0547-0     Reference: November 20th, 2019
Gene Product: September 14th, 2016
Variation: February 2nd, 2017
21 days agoy1 yellow endosperm1: reduced carotenoid pigments in endosperm; some alleles affect chlorophyll in seedlings (e.g. y1-8549, y1-pb)
6.01
GRMZM2G300348
Shumskaya, M et al. Methods in Molecular Biology 2083:223-234     Reference: November 20th, 2019
Gene Product: December 14th, 2011
Variation: August 26th, 2014
Gene Model: September 22nd, 2011
21 days agozim32 ZIM-transcription factor 32: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Fu, JY et al. 2019. Plant Cell Rep pp.doi: 10.1007/s00299-019-02490-2     Reference: November 20th, 2019
Variation: February 17th, 2019
21 days agomyc7 myc transcription factor7: transcription factor induced by iron starvation; restores yeast fet3 fet4
1.05
GRMZM2G001930
Fu, JY et al. 2019. Plant Cell Rep pp.doi: 10.1007/s00299-019-02490-2     Reference: November 20th, 2019
Gene Product: September 14th, 2016
Variation: November 10th, 2005
Gene Model: July 28th, 2016
21 days agocct2 CO CO-LIKE TIMING OF CAB1 protein domain2: photoperiod response locus; confers later flowering in teosintes under longer day lengths; knockout mutant causes early flowering under long days
 
GRMZM2G004483
Ricci, WA et al. 2019. Nature Plants pp.doi: 10.1038/s41477-019-0547-0     Reference: November 20th, 2019
Gene Product: June 18th, 2018
Variation: December 27th, 2017
Gene Model: December 27th, 2017
22 days agocdpk13 calcium dependent protein kinase13: E. coli expressed fusion protein does not appear to require calcium
 
GRMZM2G173928
Zheng, ZH et al. 2019. Plant Physiol pp.doi: 10.1104/pp.19.00752     Reference: November 19th, 2019
Gene Product: December 3rd, 2013
Variation: November 15th, 2013
Gene Model: March 31st, 2015
22 days agowc1 white cap1: dominant Wc1 kernels have pale yellow endosperm if Y1 (pearly white with y1); whiteness is emphasized in soft-starch crowns
9.07
   Zheng, ZH et al. 2019. Plant Physiol pp.doi: 10.1104/pp.19.00752     Reference: November 19th, 2019
Gene Product: September 20th, 2012
Variation: October 5th, 2012
22 days agocitt1 citrate transporter1:
1.01
GRMZM2G028521
Zheng, ZH et al. 2019. Plant Physiol pp.doi: 10.1104/pp.19.00752     Reference: November 19th, 2019
Variation: April 26th, 2016
Gene Model: April 26th, 2016
22 days agoumc15a  :
4.08
GRMZM2G013128
Zheng, ZH et al. 2019. Plant Physiol pp.doi: 10.1104/pp.19.00752     Reference: November 19th, 2019
Variation: September 1st, 2003
Gene Model: June 7th, 2018
22 days agostp1 sugar transport1: leaf cDNA csu142 similar to yeast plasma membrane sugar transport protein, single copy
8.03
   Zheng, ZH et al. 2019. Plant Physiol pp.doi: 10.1104/pp.19.00752     Reference: November 19th, 2019
Gene Product: September 1st, 2003
Variation: August 26th, 2015
22 days agorfa1 replication factor A homolog1: endosperm cDNA 5C09D05, similar to yeast DNA binding protein
 
   Zheng, ZH et al. 2019. Plant Physiol pp.doi: 10.1104/pp.19.00752     Reference: November 19th, 2019
Gene Product: September 1st, 2003
Variation: December 30th, 2010
22 days agosrph1 SGT1 disease resistance protein homolog1: interacts with RACK1 protein involved in disease resistance (Wang et al 2014)
3.09
GRMZM2G105019
Zheng, ZH et al. 2019. Plant Physiol pp.doi: 10.1104/pp.19.00752     Reference: November 19th, 2019
Variation: March 31st, 2005
Gene Model: March 23rd, 2015
23 days agopebp5 phosphatidylethanolamine-binding protein:
 
   Liu, L et al. 2019. Mol Breed 39:157     Reference: November 18th, 2019
Variation: January 31st, 2011
23 days agogt1 grassy tillers1: numerous basal branches; vegetatively totipotent in combination with id1 and factors for perennialismputative transcription factor that reduces branching, and is induced by shade
1.04
GRMZM2G005624
Liu, L et al. 2019. Mol Breed 39:157     Reference: November 18th, 2019
Gene Product: March 5th, 2012
Variation: August 18th, 2011
Gene Model: March 5th, 2012
23 days agolg1 liguleless1: In the liguleless1 mutant, ligule and auricle are missing; leaves are upright
2.01
   Liu, L et al. 2019. Mol Breed 39:157     Reference: November 18th, 2019
Gene Product: December 18th, 2014
Variation: November 8th, 2007
23 days agozhd21 ZF-HD-transcription factor 21: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.05
GRMZM5G821755
Liu, L et al. 2019. Mol Breed 39:157     Reference: November 18th, 2019
Variation: March 21st, 2018
Gene Model: March 21st, 2018
23 days agowox3a WUSCHEL homeobox 3A: embryonic transcription factor; expression in embryonic leaf similar to wox3b, but distinct from ns1/ns2 also in the wox3 gene family (Nardmann et al 2007)
6.01
GRMZM2G122537
Liu, L et al. 2019. Mol Breed 39:157     Reference: November 18th, 2019
Gene Product: August 25th, 2017
Variation: August 19th, 2018
Gene Model: August 18th, 2018
23 days agoyab1 C2C2-YABBY-transcription factor 1: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Liu, L et al. 2019. Mol Breed 39:157     Reference: November 18th, 2019
Gene Product: October 16th, 2015
23 days agotcptf21 TCP-transcription factor 21: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Liu, L et al. 2019. Mol Breed 39:157     Reference: November 18th, 2019
Gene Product: September 27th, 2019
23 days agozag6 agamous-like6: Encodes a MADS-box transcription factor homologous to SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 that affects flowering time in Arabidopsis.
 
GRMZM2G026223
Liu, L et al. 2019. Mol Breed 39:157     Reference: November 18th, 2019
Variation: June 9th, 2014
Gene Model: June 9th, 2014
26 days agoaco1 aconitase1: electrophoretic mobility; monomeric
4.04
GRMZM2G020801
Eprintsev, AT et al. 2015. J Plant Physiol 181:14-19     Reference: November 15th, 2019
Gene Product: September 1st, 2003
Variation: March 28th, 2015
Gene Model: March 28th, 2015
26 days agoaco3 aconitase3: electrophoretic mobility
9.07
GRMZM2G009808
Eprintsev, AT et al. 2015. J Plant Physiol 181:14-19     Reference: November 15th, 2019
Gene Product: September 1st, 2003
Gene Model: March 29th, 2015
26 days agokrp15 kinesin-related protein15:
10.04
GRMZM2G054418
Zhang, J et al. 2019. Physiol Plant pp.doi: 10.1111/ppl.13048     Reference: November 15th, 2019
Gene Product: November 10th, 2017
Variation: January 3rd, 2013
Gene Model: March 3rd, 2016
26 days agoAI668346  :
2.08
GRMZM2G464000
Zhang, J et al. 2019. Physiol Plant pp.doi: 10.1111/ppl.13048     Reference: November 15th, 2019
Variation: July 29th, 2004
Gene Model: January 30th, 2018
26 days agoaco6 aconitase6:
 
GRMZM2G364988
Eprintsev, AT et al. 2019. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2019.11.018     Reference: November 15th, 2019
Gene Product: September 1st, 2003
Gene Model: November 15th, 2019
26 days agoaco7 aconitase7:
 
GRMZM2G036131
    Gene Product: September 1st, 2003
Gene Model: November 15th, 2019
26 days agoaco8 aconitase8:
 
GRMZM2G467338
    Gene Product: September 1st, 2003
Gene Model: November 15th, 2019
26 days agoaco9 aconitase9:
 
GRMZM2G029204
    Gene Product: September 1st, 2003
Gene Model: November 15th, 2019
26 days agoaco10 aconitase10:
 
GRMZM2G127429
    Gene Product: September 1st, 2003
Gene Model: November 15th, 2019
26 days agoaco11 aconitase11:
 
GRMZM2G311024
    Gene Product: September 1st, 2003
Gene Model: November 15th, 2019
26 days agoaco2 aconitase2: electrophoretic mobility
10.04
GRMZM5G858454
Eprintsev, AT et al. 2019. Plant Physiol Biochem pp.doi: 10.1016/j.plaphy.2019.11.018     Reference: November 15th, 2019
Gene Product: September 1st, 2003
Variation: September 3rd, 2013
Gene Model: March 29th, 2015
28 days agocenH3 centromeric histone H3:
6.06
GRMZM2G158526
Feng, C et al. 2019. Plant J pp.DOI: 10.1111/tpj.14606     Reference: November 13th, 2019
Gene Product: December 24th, 2015
Variation: November 7th, 2012
Gene Model: October 24th, 2011

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