Gene record

GRMZM2G014392/ZEAMMB73_663081 (vp14 - viviparous14) [Classical Gene List]

   GENE MODEL        SEQUENCE       GENETIC INFORMATION        
Note: A gene is a specific type of locus; the word "gene" should not be considered to be synonymous with "locus".


Overview

Gene name: vp14 (viviparous14)
Synonyms: NCED1 (per Capelle, V), NCED1 homolog, nine-cis-epoxycarotenoid dioxygenase1, siu95953a, siu95953a(82), ufg4, umc1218

Gene Products:


Description:

viviparous; yellow endosperm; abscisic acid biosynthesis; SSR umc1218



ENTREZ Gene: 732819
Type: Gene
Species: Zea mays ssp. mays

Linkage Group: 1
Bin: 1.08
Arm: L (long arm)
Phenotypes:
   viviparous kernel
   green seedling
   yellow endosperm


Properties: MNL Gene List


Associated Gene Models:

ZEAMMB73_663081 [Classical Gene] (Gramene ID: GRMZM2G014392) (Genome Browser)


BACs:
   b0014G21 (via BAC pool PCR)
   b0041G13 (via BAC pool PCR)
   b0014G21 (via Overgo Hybridization)
   b0111A12 (via Overgo Hybridization)
   c0121P17 (via Overgo Hybridization)
   c0122B02 (via Overgo Hybridization)
   c0128P13 (via Overgo Hybridization)
   c0152C12 (via Overgo Hybridization)
   c0178H08 (via Overgo Hybridization)
   c0055F15 (via in silico)
   c0467M01 (via in silico)

ESTs:
   siU95953 (via in silico)

Probes:
   p-p*950 (via RFLP Hybridization)

Overgos:
   siU95953_ov (via in silico)

SSRs:
   p-umc1218 (via in silico)

Stocks:

Related Loci:

none


Offsite Resources:
  Classical Genes -> GRMZM2G014392
  Maize B73 Genome Sequencing Project Contig 2005 -> ctg52
   

Annotations

Annotate this record

 Add ontology terms
 Add free text annotation


No ontology terms attached to this record


Comments:
viviparous; yellow endosperm; abscisic acid biosynthesis; SSR umc1218

Genetic coordinate from BAC matches in v2 (EHC Aug 2011)

physically mapped as an overgo, in agreement with RFLP mapping

Encodes enzyme that catalyzes the cleavage of 9-cis-epoxy-carotenoids to form C25 apo-aldehydes and xanthoxin, a precursor of ABA

No user annotations


   

Chromosome Coordinates



   B73 RefGen_v2 sequence   
Locus Lookup results based on:

Gene models:

See details

Physically mapped:

See details

Placed BACs:

See details

Genetically mapped:

See details

   

Map Coordinates

(* indicates the locus is on the backbone)
Map Coordinate Bin
bins 1 1.08    1.08
Genetic 1 * 202.51
Genetic 1997 1 176.00 1.08
Genetic 2005 1 * 178.80 1.08
IBM2 2004 neighbors 1 809.89 1.08
IBM2 2004 neighbors frame 1 809.89 1.08
IBM2 2005 Neighbors 1 809.89
IBM2 2005 Neighbors Frame 1 809.89
IBM2 2008 Neighbors 1 798.74
IBM2 2008 Neighbors Frame 1 798.74
IBM2 FPC0402 genetic neighbors 1 * 812.01 1.08
IBM2 FPC0507 1 * 810.05
IBM2 neighbors 1 798.74 1.08
IBM2 neighbors frame 1 798.74 1.08
IBM neighbors v.2 1 710.58 1.08
Pioneer composite 1999 1 178.80 1.08
UMC 95 1 175.60 1.08
UMC 96 1 149.60 +/- 1 1.08
UMC 98 1 * 178.80 1.08
   

Nearby Loci


These are nearby loci on a selection of high-res maps.
Change Map:

IBM2 2008 Neighbors Frame 1

790.0 IDP6055
792.6 IDP8287
792.6 TIDP3087
793.4 sdg123
795.5 IDP6802
796.0 cyp8
798.7 vp14
798.7 lhcb9
799.4 IDP8336
800.7 umc1991
801.0 krp13
802.5 IDP1468
803.0 TIDP3612
803.0 TIDP3264
803.0 TIDP3451
803.0 TIDP3760
803.0 TIDP3149
803.0 IDP2405
803.0 TIDP5424
804.0 gpm608
805.3 umc1843
805.3 umc1383
807.1 gap1
807.6 umc2385
808.4 IDP4137
Change Map:

NAM

This locus is not mapped on NAM.

Change Map:

IBM2 2008 Neighbors 1

789.0 bnl29d(pds)
789.0 ufg(vp2274a)
789.0 dup103
790.0 IDP6055
790.8 csu982(goa)
792.6 IDP8287
792.6 TIDP5083
792.6 TIDP3087
793.4 sdg123
795.5 IDP8685
795.5 IDP8505
795.5 IDP6802
795.5 IDP6733
795.9 gpm547c
796.0 cyp8
798.7 csu780b
798.7 csu531
798.7 vp14
798.7 lhcb9
798.7 rgps10558a
798.9 cdo680a
799.4 TIDP5099
799.4 IDP8336
799.9 T1-3(5267)(1)
800.7 umc1991
801.0 krp13
802.5 TIDP2913
802.5 IDP1468
802.5 TIDP4644
803.0 IDP8615
803.0 TIDP3612
803.0 TIDP3264
803.0 TIDP3451
803.0 TIDP3760
803.0 TIDP3149
803.0 IDP2405
803.0 TIDP5424
804.0 gpm608
805.3 umc1383
805.3 umc1843
806.5 umc2240
807.1 gap1
807.6 umc2385
808.4 IDP4137
Change Map:

Genetic 1

192.6 umc1955
193.0 pht2
193.6 umc2181
193.8 npi255
194.4 umc1838a
194.8 id1
195.4 umc1446
195.8 umc1928
196.2 mmp22
196.3 an1
196.3 bz2
198.4 sdg123
199.0 cyp8
200.2 umc1991
200.3 krp13
201.3 lhcb9
201.3 umc1383
201.6 umc2240
201.8 gap1
202.5 umc1914
202.5 vp14
202.8 AY109506
202.8 lim247
203.0 mbd115
203.1 cdj2
203.4 rz474b(dnaj)
203.8 ufg53
204.0 brd1
204.3 ufg10
205.0 tha4
205.0 T1-9(8389)(1)
205.4 csu696
206.0 rth1
206.5 rz403
207.0 ptd1
208.0 T1-3(5267)(1)
208.3 chrom7
208.4 kip1
209.0 mmp149b
209.8 glb1
210.5 tub3
210.5 gbp2
210.6 umc2047
210.7 gst40
211.5 umc140a
211.6 tbp1
211.8 bnlg1331
211.8 nas3
211.8 csu222a(wsi)
   

Allele/variation/polymorphism

vp14-2274 (Allele) vp14-3250 (Allele) vp14-87-2274-37 (Allele)
Vp14-W22 (Allele) [Links]    

   

Genetic information

   

References

   

External Links


Additional External Resources:
U95953 (at EMBL via p-umc1218)
U95953 (at GenBank via p-umc1218)
U95953 (at DDBJ via p-umc1218)
TC177976 (at TIGR/Dana Farber ZmGI via p-umc1218)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via p-umc1218)
52 (at AGOL WebFPC 2005 via p-umc1218)
52 (at AGOL WebFPC 2005 via b0014G21)
52 (at AGI WebFPC v2 via b0014G21)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via b0014G21)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via b0014G21)
52 (at AGI WebFPC v2 via b0041G13)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via b0041G13)
52 (at AGOL WebFPC 2005 via b0041G13)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via b0041G13)
U95953 (at GenBank via siU95953)
TC177976 (at TIGR/Dana Farber ZmGI via siU95953)
52 (at AGOL WebFPC 2005 via siU95953)
363 (at AGOL WebFPC 2005 via siU95953)
ctg363 (at Maize B73 Genome Sequencing Project Contig 2005 via siU95953)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via siU95953)
U95953 (at GenBank via siU95953_ov)
TC177976 (at TIGR/Dana Farber ZmGI via siU95953_ov)
52 (at AGOL WebFPC 2005 via b0014G21)
52 (at AGI WebFPC v2 via b0014G21)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via b0014G21)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via b0014G21)
52 (at AGOL WebFPC 2005 via b0111A12)
52 (at AGI WebFPC v2 via b0111A12)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via b0111A12)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via b0111A12)
52 (at AGI WebFPC v2 via c0121P17)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via c0121P17)
52 (at AGOL WebFPC 2005 via c0121P17)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via c0121P17)
52 (at AGOL WebFPC 2005 via c0122B02)
52 (at AGI WebFPC v2 via c0122B02)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via c0122B02)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via c0122B02)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via c0128P13)
52 (at AGI WebFPC v2 via c0128P13)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via c0128P13)
52 (at AGOL WebFPC 2005 via c0128P13)
52 (at AGOL WebFPC 2005 via c0152C12)
52 (at AGI WebFPC v2 via c0152C12)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via c0152C12)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via c0152C12)
52 (at AGI WebFPC v2 via c0178H08)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via c0178H08)
52 (at AGOL WebFPC 2005 via c0178H08)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via c0178H08)
52 (at AGOL WebFPC 2005 via c0055F15)
AC230016 (at GenBank via c0055F15)
AC230016 (at B73 Sequencing Project via c0055F15)
52 (at AGI WebFPC v2 via c0055F15)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via c0055F15)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via c0055F15)
ctg52 (at Maize B73 Genome Sequencing Project Contig 2005 via c0467M01)
AC201886 (at GenBank via c0467M01)
AC201886 (at B73 Sequencing Project via c0467M01)
52 (at AGOL WebFPC 2005 via c0467M01)
c0467M01 (at MGSCbac via c0467M01)
52 (at AGI WebFPC v2 via c0467M01)
ctg52 (at Maize B73 Genome Sequencing Project Contig v 1,2 via c0467M01)