With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.
Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.
This page is based on our monthly release. The most recent updates can be found on our curation site or by clicking the Most Recent Data option in the menu below.
| Last Update | Gene | Full Name : Description | Chromosome
or Bin | Gene
Model | Recent Reference | Orthologs | Update information |
| 7 days ago | tu1 | tunicate1: dominant Tu1 ears develop long glumes enclosing individual kernels; tassels develop large, coarse glumes and sex reversal; both inflorescences become grossly vegetative and sterile in homozygotes | 4.08 - 4.08 | GRMZM2G370777
| Muenster, T et al. 2002. Maydica 47:287-301 | | Reference: February 4th, 2011
Variation: September 1st, 2003
Gene Model: May 9th, 2012
|
| 7 days ago | chi1 | chalcone flavanone isomerase1: genomic sequence, gene-specific probe, transcript defined by S1-nuclease protection analysis | 1.11 | GRMZM2G119186
| Sharma, M, et al. 2011. Genetics. 188:69-79 | | Reference: June 10th, 2011
Gene Product: October 13th, 2010
Variation: September 1st, 2003
Gene Model: May 9th, 2012
|
| 14 days ago | vt2 | vanishing tassel2: inflorescence development; TRP-depenedent auxin synthesis | | GRMZM2G127308
| Phillips, K, et al. 2011. Plant Cell. 0:doi: 10.1105/tpc.110.075267 | | Reference: March 31st, 2011
Gene Product: April 30th, 2011
Variation: April 1st, 2011
Gene Model: May 2nd, 2012
|
| 17 days ago | br2 | brachytic2: like br1; mi1 is allelic and preceded (1935), but br2 name is retained due to long usage | 1.06 - 1.07 | GRMZM2G315375
| McLamore, E, et al. 2010. Plant J. 63:1004-1016 | | Reference: November 1st, 2010
Gene Product: April 29th, 2012
Variation: September 1st, 2003
Gene Model: April 28th, 2012
|
| 19 days ago | c1 | colored aleurone1: C1 colored; C1-I dominant colorless; c1 colorless, includes c1-p (pigment inducible by light at germination), c1-n (not inducible) | 9.01 | | Coe, E. 1962. Genetics 47:779-783 | | Reference: April 27th, 2012
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 22 days ago | tb1 | teosinte branched1: many tillers; ear branches tassel-like; affects apical dominance | 1.09 | | Studer, A; Doebley, JF. 2012. Genetics. 0:doi: 10.1534/genetics.112.138479 | | Reference: April 24th, 2012
Gene Product: January 31st, 2005
Variation: January 20th, 2011
|
| 23 days ago | arpp3 | acidic ribosomal protein P3: novel acidic phosphoprotein | 5.03 | | Bailey-Serres, J et al. 1997. Plant Physiol 114:1293-1305 | | Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: April 23rd, 2012
|
| 28 days ago | dek1 | defective kernel1: germless; colorless (mosaic) aleurone; floury white endosperm; anthocyanins and carotenoids absent; cultured embryos not obtained (aka clf1, gay1) | 1.03 | | Yi, G et al. 2011. Plant Physiol 156:1826-1836 | | Reference: April 18th, 2012
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 33 days ago | lox1 | lipoxygenase1: Full length cDNA is expressed in E. coli (Kim et al. 2003) | 3.06 | | Gao, XQ et al. 2008. Planta 227:491-503 | | Reference: July 24th, 2008
Gene Product: September 1st, 2003
Variation: April 13th, 2012
|
| 51 days ago | sus2 | sucrose synthase2: Encodes sucrose synthase-2 (SUS2), one of 3 loci defined for this function; compare sh1 and sus1. | 1.04 | | Subbaiah, C; Sachs, M pp.345-365 in Bennetzen, J; Hake, S. (eds) 2009 (vol1). Springer-Verlag, NY | | Reference: August 21st, 2010
Gene Product: October 25th, 2006
Variation: March 26th, 2012
|
| 54 days ago | wgs1 | white green sectors1: white seedling with green sectors | 5.07 - 5.08 | | Neuffer, MG and England, DJ. 1995. MNL 69:43-46 | | Reference: September 1st, 2003
Variation: March 23rd, 2012
|
| 54 days ago | smk*-N1160 | small kernelN1160: viable seedling? | 5.05 - 5.09 | | Neuffer, MG et al. 1978. MNL 52:84-88 | | Reference: September 1st, 2003
Variation: March 23rd, 2012
|
| 58 days ago | ms26 | male sterile26: tapetal cells abnormal, die early; microspores vacuolate early and abort after the tetrad stage | 1.02 - 1.02 | | Dobritsa, AA et al. 2009. Plant Physiol 151:574-589 | | Reference: March 16th, 2012
Variation: March 19th, 2012
|
| 61 days ago | y1 | yellow endosperm1: reduced carotenoid pigments in endosperm; some alleles affect chlorophyll in seedlings (e.g. y1-8549, y1-pb) | 6.01 | GRMZM2G300348
| Li, F; Tsfadia, O; Wurtzel, E. 2009. Plant Signaling and Behavior. 4:208-211 | | Reference: December 14th, 2011
Gene Product: December 14th, 2011
Variation: March 16th, 2012
Gene Model: September 22nd, 2011
|
| 69 days ago | knox5 | knotted related homeobox5: class I homeobox; cDNA and genomic clones; gene-specific probe; sequence and expression similar to lg3 and knox11 | 8.05 | GRMZM5G832409
| Bauer, PJ, et al. 2004. Planta. 219:359-368 | | Reference: August 3rd, 2004
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 8th, 2012
|
| 70 days ago | knox1 | knotted related homeobox1: class 2 root homeobox; cDNA and genomic clones; gene-specific probe | 1.01 | GRMZM2G159431
| Reiser, L et al. 2000. Plant Mol Biol 42:151-166 | | Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 7th, 2012
|
| 70 days ago | knox10 | knotted related homeobox10: class I homeobox, gene-specific probe; cDNA and genomic clones | 5.01 - 5.03 | GRMZM2G002225
| Evans, M. 2007. Plant Cell. 19:46-62 | | Reference: October 1st, 2010
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: March 7th, 2012
|
| 71 days ago | bk2 | brittle stalk2: brittle plant parts after 4-leaf stage | 9.04 - 9.05 | GRMZM2G109326
| Sindhu, A et al. 2007. Plant Physiol 145:1444-59 | | Reference: March 6th, 2012
Gene Product: March 6th, 2012
Variation: March 6th, 2012
Gene Model: March 5th, 2012
|
| 72 days ago | gt1 | grassy tillers1: putative transcription factor that reduces branching, and is induced by shadenumerous basal branches; vegetatively totipotent in combination with id1 and factors for perennialism | 1.04 | GRMZM2G005624
| Whipple, C. 2011. Proc Natl Acad Sci, USA 108:E506-E512 | | Reference: March 1st, 2012
Gene Product: March 5th, 2012
Variation: August 18th, 2011
Gene Model: March 5th, 2012
|
| 72 days ago | bm6 | brown midrib6: not allelic to bm1 - bm5, novel bm locus (Paul Scott and Thomas Lubberstedt, pers comm) | | | Ali, Farhad et al. 2010. Plant Breed 129:724-726 | | Reference: March 4th, 2012
Variation: March 5th, 2012
|
| 72 days ago | rgh3 | rough endosperm3: Mature rgh3 seeds show a rough, etched, or pitted endosperm surface as well as a reduced seed size | | GRMZM2G128189
| Fouquet, R et al. 2011. Plant Cell 23:4280-4297 | | Reference: March 1st, 2012
Gene Product: December 29th, 2011
Variation: December 29th, 2011
Gene Model: March 5th, 2012
|
| 72 days ago | brd1 | brassinosteroid-deficient dwarf1: Mutant plants have essentially no internode elongation and exhibit no etiolation response when germinated in the dark. | | GRMZM2G103773
| Makarevitch, I, Thompson, A, Muehlbauer, GJ, Springer, NM, 2012. PLoS One. 7:e30798 | | Reference: February 15th, 2012
Gene Product: February 18th, 2012
Variation: March 5th, 2012
Gene Model: February 15th, 2012
|
| 73 days ago | bm1 | brown midrib1: brown pigment over vascular bundles of leaf sheath, midrib, and blade, especially evident on the midribs of healthy leaves at flowering; lignin content at maturity 86% of normal; encodes cinnamyl alcohol dehydrogenase | 5.04 | | Cao, J. 2007. Genetic dissection of rf2a-mediated fertility restoration pathway in maize | | Reference: May 5th, 2010
Gene Product: September 1st, 2003
Variation: March 4th, 2012
|
| 73 days ago | bm5 | brown midrib5: | | | Chen, Y; et al. 2011. Maize Genetics Conference Abstracts. 53:P166 | | Reference: March 25th, 2011
Variation: March 4th, 2012
|
| 76 days ago | aox2 | alternative oxidase2: primers give PCR product closely similar to alternative oxidase in other species | | GRMZM2G125669
| Karpova, O et al. 2002. Differential expression of alternative oxidase genes in maize mitochondrial mutants. Plant Cell 14:3271-3284 | | Reference: September 1st, 2003
Gene Product: February 22nd, 2012
Variation: March 1st, 2012
Gene Model: February 17th, 2012
|
| 77 days ago | du1 | dull endosperm1: glassy, tarnished endosperm; encodes a starch synthase III, that with an isoamylase-type debranching enzyme represses accumulation of phytoglycogen | 10.03 | GRMZM2G141399
| Lin, Q et al. 2012. Plant Physiol 158:679-692 | | Reference: February 29th, 2012
Gene Product: August 23rd, 2005
Variation: September 1st, 2003
Gene Model: February 28th, 2012
|
| 77 days ago | su4 | sugary4: duplicate factor: in combination with su3 gives sugary endosperm phenotype. | 6.05 | GRMZM2G090905
| Lin, Q et al. 2012. Plant Physiol 158:679-692 | | Reference: February 29th, 2012
Gene Product: October 25th, 2011
Variation: June 3rd, 2011
Gene Model: October 24th, 2011
|
| 84 days ago | aox1 | alternative oxidase1: primers give PCR product closely similar to alternative oxidase in other species | 2.02 | AC233960.1_FG002
| Polidoros, AN et al. 1998. MNL 72:68-70 | | Reference: September 1st, 2003
Gene Product: February 22nd, 2012
Variation: February 22nd, 2012
Gene Model: February 17th, 2012
|
| 84 days ago | aox3 | alternative oxidase3: | | GRMZM2G074743
| Karpova, O et al. 2002. Differential expression of alternative oxidase genes in maize mitochondrial mutants. Plant Cell 14:3271-3284 | | Reference: September 1st, 2003
Gene Product: February 22nd, 2012
Gene Model: February 17th, 2012
|
| 89 days ago | hyd7 | hydroxylase7: beta-carotene hydroxylase | | | Yan, J et al. 2010. Nature Genetics 42:322-327 | | Reference: February 2nd, 2012
Gene Product: December 13th, 2011
Variation: February 17th, 2012
|
| 90 days ago | lyce1 | lycopene epsilon cyclase1: determines qualitative composition of endosperm carotenoids | 8.05 | GRMZM2G012966
| Yan, J et al. 2010. Nature Genetics 42:322-327 | | Reference: February 2nd, 2012
Gene Product: December 10th, 2011
Variation: February 16th, 2012
Gene Model: October 3rd, 2011
|
| 90 days ago | ppr2263 | pentatricopeptide repeat protein2263: encodes a protein required for RNA editing in mitochondrial nad5 and cob transcript (Sosso et al 2012) | | AC215198.3_FG002
| Sosso, D; et al. 2012. Plant Cell. 0:epub ahead of print | Os06g08660 (MSU/TIGR)
Os06g08660 (Gramene) | Reference: February 15th, 2012
Gene Product: February 15th, 2012
Variation: February 16th, 2012
Gene Model: February 15th, 2012
|
| 91 days ago | bn1 | brown aleurone1: yellowish brown aleurone color | 7.04 - 7.04 | | Stinard, PS. 2011. MNL 84:42-43 | | Reference: February 15th, 2012
Variation: September 21st, 2007
|
| 91 days ago | dxs3 | deoxy xylulose synthase3: | | GRMZM2G173641
| Vallabhaneni, R; Wurtzel, E. 2009. Plant Physiol. 150:562-572 | | Reference: December 10th, 2011
Gene Product: August 17th, 2004
Variation: February 15th, 2012
Gene Model: December 9th, 2011
|
| 91 days ago | ibn1 | inhibitor of bn1: Dominant inhibitor of Bn1 alleles. Inhibitory alleles are present in Mo20W and K55 inbred lines. Tighly linked to Wc1 in these inbred lines, and is possibly allelic to wc1. | | | Stinard, PS. 2011. MNL 84:42-43 | | Reference: February 15th, 2012
Variation: February 15th, 2012
|
| 91 days ago | dxs2 | deoxy xylulose synthase 2: root specific; function inferred from sequence and expression pattern comparison with Medicago trunculata genes | 9.03 | GRMZM2G493395
| Vallabhaneni, R; Wurtzel, E. 2009. Plant Physiol. 150:562-572 | | Reference: December 10th, 2011
Gene Product: August 17th, 2004
Variation: February 15th, 2012
Gene Model: December 9th, 2011
|
| 3 months ago | et1 | etched1: pitted, scarred endosperm, virescent seedling; plastid membranes altered | 3.09 | | da Costa e Silva, O et al. 2004. Plant J 38:923-939 | | Reference: February 14th, 2012
Variation: November 11th, 2010
|
| 3 months ago | hyd3 | hydroxylase3: | | | Yan, J et al. 2010. Nature Genetics 42:322-327 | | Reference: February 2nd, 2012
Gene Product: December 13th, 2011
Variation: September 3rd, 2011
|
| 3 months ago | el1 | elongate1: chromosomes uncoiled during meiotic metaphase and anaphase in male and female; frequent unreduced gametes | 8.04 - 8.09 | | Stinard, PS. 1992. MNL 66:3-4 | | Reference: January 30th, 2012
Gene Product: January 3rd, 2006
Variation: September 1st, 2003
|
| 3 months ago | ms*-6003 | : | | | | | Variation: January 25th, 2012
|
| 3 months ago | v*-N826 | virescentN826: | 8.04 - 8.09 | | Neuffer, MG. 1994. Personal communication | | Reference: September 1st, 2003
Variation: January 24th, 2012
|
| 4 months ago | cps2 | chloroplast protein synthesis2: 20-fold reduced RUBISCO, 2-fold reduced thylakoid polypeptides, decreased chloroplast polysomes (aka hcf133) | 6.01 - 6.08 | AC215201.3_FG005
| Barkan, A. 2011. 0:1 | | Reference: January 11th, 2012
Gene Product: October 3rd, 2011
Variation: September 1st, 2003
Gene Model: September 6th, 2011
|
| 4 months ago | pet3 | photosynthetic electron transport3: This gene creates a product required for cytochrome b6f accumulation. Mu tagging and cloning finds this loci to be gene model GRMZM2G177145, which has sequence similarity to CCB4 ortholog (heme assembly), Barkan, 2011lacks cytochrome bf polypeptides; likely allelic to hcf6 | | GRMZM2G177145
| Barkan, A. 2011. 0:1 | | Reference: January 11th, 2012
Variation: September 1st, 2003
Gene Model: September 6th, 2011
|
| 4 months ago | cps1 | chloroplast protein synthesis1: reduced levels of RUBISCO and all thylakoid membrane complexes; unaltered chloroplast mRNA; decreased chloroplast polysomes | 1.06 - 1.12 | GRMZM2G156565
| Barkan, A. 2011. 0:1 | | Reference: January 11th, 2012
Gene Product: October 3rd, 2011
Variation: September 1st, 2003
Gene Model: September 6th, 2011
|
| 4 months ago | p1 | pericarp color1: dominant P1 regulates red pigment (phlobaphenes) in cob and pericarp (ex. P1-wr red cob; P1-rr red pericarp and cob) and in tassel glumes and husks; tissue-specific allele variations; SSR phi095 | 1.03 | | Rhee, Y et al. 2010. Genetics 186:843-855 | | Reference: January 6th, 2012
Gene Product: October 13th, 2010
Variation: April 18th, 2005
|
| 4 months ago | ufo1 | unstable factor for orange1: dominant Ufo1 plants have orange color in anthers, silks, and most other plant parts in presence of P1-wr or P1-rr; growth retarded | 10.03 | | Rhee, Y et al. 2010. Genetics 186:843-855 | | Reference: January 6th, 2012
Variation: September 1st, 2003
|
| 4 months ago | emp4 | empty pericarp4: mitochondrion pentatricopeptide repeat (PPR) protein involved in specific expression of mitochondrial transcripts; impaired differentiation of basal endosperm transfer cells | 1.10 | GRMZM2G092198
| Perez, P et al. 2011. Patent 8026413 | LOC_Os03g51840 (MSU/TIGR)
LOC_Os03g51840 (Gramene) | Reference: January 5th, 2012
Gene Product: September 16th, 2009
Variation: September 19th, 2011
Gene Model: November 29th, 2011
|
| 4 months ago | rum1 | rootless with undetectable meristems1: primordia for seminal roots and for laterals on the primary root absent | | | Taramino, G et al. 2011. Patent 7960613 | | Reference: January 5th, 2012
Gene Product: November 1st, 2011
Variation: November 1st, 2011
|
| 4 months ago | adh1 | alcohol dehydrogenase1: electrophoretic mobility; null alleles are known; dimeric; intra/interlocus hybrid bands occur); SSR umc1726 | 1.10 | | Strommer, JN. 2011. Plant J 66:128-142 | | Reference: December 30th, 2011
Gene Product: July 8th, 2009
Variation: September 1st, 2003
|
| 4 months ago | adh2 | alcohol dehydrogenase2: electrophoretic mobility, null alleles are known; dimeric, intra/interlocus hybrid bands occur; SSRs nc004, phi021 | 4.03 | | Strommer, JN. 2011. Plant J 66:128-142 | | Reference: December 30th, 2011
Gene Product: July 8th, 2009
Variation: September 1st, 2003
|
| 4 months ago | o5 | opaque endosperm5: like o1; virescent to yellow or white seedlings | 7.02 | GRMZM2G142873
| Myers, AM et al. 2011. Plant Cell 23:2331-2347 | | Reference: December 28th, 2011
Gene Product: June 17th, 2011
Variation: June 17th, 2011
Gene Model: September 19th, 2011
|
| 4 months ago | o7 | opaque endosperm7: like o1; high lysine content | 10.07 | GRMZM2G074759
| Miclaus, M et al. 2011. Genetics 189:1271-1280 | | Reference: December 28th, 2011
Gene Product: December 20th, 2011
Variation: December 16th, 2011
Gene Model: December 16th, 2011
|
| 4 months ago | pgd2 | 6-phosphogluconate dehydrogenase2: electrophoretic mobility, null allele is known; cytosolic; dimeric; intra/interlocus hybrid bands occur; cDNA probe | 3.05 | | Averill, RH et al. 1998. Plant J 14:449-457 | | Reference: December 27th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 4 months ago | pgd1 | 6-phosphogluconate dehydrogenase1: electrophoretic mobility, null alleles occur; cytosolic; dimeric, intra/interlocus hybrid bands occur; cDNA csu262 single copy | 6.01 | | Averill, RH et al. 1998. Plant J 14:449-457 | | Reference: December 27th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 4 months ago | pebp8 | phosphatidylethanolamine-binding protein8: | | GRMZM2G179264
| Meng, X et al. 2011. Plant Cell 23:942-960 | | Reference: December 26th, 2011
Gene Product: May 6th, 2011
Variation: December 15th, 2010
Gene Model: May 6th, 2011
|
| 4 months ago | rp1 | resistance to Puccinia sorghi1: dominant Rp1 resistant | 10.01 | | Chaikam, V et al. 2011. Theor Appl Genet 123:985-997 | | Reference: December 26th, 2011
Variation: September 1st, 2003
|
| 4 months ago | bm3 | brown midrib3: like bm1; has lowered activity of caffeic acid O-methyl transferase; application: modified lignin has improved digestibility in ruminants; silage corn with bm3 is in production. However, bm3 results in weaker stalks, reduced stover and grain yield, and in some cases reduced maturity; these effects appear genotype-specific | 4.04 | | Fornale, S et al. 2010. Plant J 64:633-644 | | Reference: December 22nd, 2011
Gene Product: February 16th, 2011
Variation: October 16th, 2007
|
| 4 months ago | myb31 | MYB31 transcription factor: R2R3-MYB factor, regulates lignin genes | | | Fornale, S et al. 2010. Plant J 64:633-644 | | Reference: December 22nd, 2011
Gene Product: February 16th, 2011
Variation: February 16th, 2011
|
| 4 months ago | myb42 | myb transcription factor 42: | | | Fornale, S et al. 2010. Plant J 64:633-644 | | Reference: December 22nd, 2011
Gene Product: February 16th, 2011
Variation: February 16th, 2011
|
| 4 months ago | na1 | nana plant1: short, erect dwarf; no response to gibberellins | 3.06 - 3.08 | GRMZM2G449033
| Hartwig, T et al. 2011. Proc Natl Acad Sci, USA 108:19814-19819 | | Reference: December 20th, 2011
Gene Product: December 20th, 2011
Variation: December 20th, 2011
Gene Model: December 20th, 2011
|
| 4 months ago | fl2 | floury2: endosperm opaque, soft; dosage effect; encodes an abnormal 24kDa alpha-zein as deduced from clone | 4.03 | GRMZM2G397687
| Pirona, R et al. 2005. Maydica 50:515-530 | | Reference: June 24th, 2009
Gene Product: September 1st, 2003
Variation: August 24th, 2009
Gene Model: December 19th, 2011
|
| 5 months ago | rrb1 | related to retinoblastoma1: nuclear, low copy, ubiquitous expression; phosphorylation dependent role in cell division | 2.09 | | Gordon-Kamm, W et al. 2002. Proc Natl Acad Sci, USA 99:11975-11980 | | Reference: December 17th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 5 months ago | AY109994 | : | 10.02 | | | | Variation: December 16th, 2011
|
| 5 months ago | psy2 | phytoene synthase2: single copy cDNA, csu572, similar to tomato phytoene synthase; carotenoid biosynthesis | 8.07 | | Li, F; Tsfadia, O; Wurtzel, E. 2009. Plant Signaling and Behavior. 4:208-211 | | Reference: December 14th, 2011
Gene Product: December 14th, 2011
Variation: September 12th, 2005
|
| 5 months ago | psy3 | phytoene synthase3: induced by salt and drought but not ABA; complements bacterial PSY deficiency (Li et al 2008) | 7.03 | | Li, F; Tsfadia, O; Wurtzel, E. 2009. Plant Signaling and Behavior. 4:208-211 | | Reference: December 14th, 2011
Gene Product: December 14th, 2011
Variation: August 26th, 2011
|
| 5 months ago | vp5 | viviparous5: like vp2cDNA, strongest hybridization to this site; other sites are near o2, bnl17.25 and dup103; encodes a 2-step phytoene desaturase; SSR umc1070 | 1.02 - 1.02 | | Matusova, R et al. 2005. Plant Physiol 130:920-934 | | Reference: March 5th, 2010
Gene Product: December 13th, 2011
Variation: September 1st, 2003
|
| 5 months ago | vp9 | viviparous9: (was y7, z1) like vp2; vp9-4889 dormant, pale aleurone, pale green seedling | 7.02 | | Khavkin, EE. 1998. Genetic control of plant morphogenesis. Fiziol Rast 45:676-689 | | Reference: April 3rd, 2008
Gene Product: December 13th, 2011
Variation: October 31st, 2006
|
| 5 months ago | hyd4 | hydroxylase4: | | | Li, Q et al. 2010. Transgenic Research 19:1053-1068 | | Reference: August 30th, 2011
Gene Product: December 13th, 2011
Variation: September 3rd, 2011
|
| 5 months ago | hyd5 | hydroxylase5: beta-carotene hydroxylase | | | Vallabhaneni, R, et al. 2009. Plant Physiol. 151:1635-1645 | | Reference: April 7th, 2010
Gene Product: December 13th, 2011
Variation: September 3rd, 2011
|
| 5 months ago | hyd6 | hydroxylase6: | | | Li, Q et al. 2010. Transgenic Research 19:1053-1068 | | Reference: August 30th, 2011
Gene Product: December 13th, 2011
Variation: September 3rd, 2011
|
| 5 months ago | zep1 | zeaxanthin epoxidase1: | 2.04 | | Vallabhaneni, R; Wurtzel, E. 2009. Plant Physiol. 150:562-572 | | Reference: December 10th, 2011
Gene Product: December 10th, 2011
Variation: August 29th, 2011
|
| 5 months ago | ps1 | pink scutellum1: (aka vp7, lyc1, lycB) some alleles viviparous; endosperm and scutellum pink, seedling white with pink flush | 5.04 - 5.04 | | Stinard, PS; Jackson, JD. 2009. MNL 83:52 | | Reference: March 17th, 2011
Gene Product: December 10th, 2011
Variation: December 3rd, 2009
|
| 5 months ago | y9 | pale yellow9: pale endosperm, slightly viviparous; green to pale green seedlings and plants; accumulates 9,15,9'-tri-cis-zeta carotene in dark | 10.03 - 10.03 | GRMZM2G011746
| Chen, Y et al. 2010. Plant Physiol 153:66-79 | | Reference: May 8th, 2010
Gene Product: December 10th, 2011
Variation: October 26th, 2007
Gene Model: September 22nd, 2011
|
| 5 months ago | zep2 | zeaxanthin epoxidase2: | | | Vallabhaneni, R; Wurtzel, E. 2009. Plant Physiol. 150:562-572 | | Reference: December 10th, 2011
Gene Product: December 10th, 2011
Variation: August 29th, 2011
|
| 5 months ago | hds1 | hydroxymethylbutenyl diphosphate synthase1: | | GRMZM2G137409
| Vallabhaneni, R; Wurtzel, E. 2009. Plant Physiol. 150:562-572 | | Reference: December 10th, 2011
Gene Product: December 10th, 2011
Gene Model: December 10th, 2011
|
| 5 months ago | hmdr1 | hydroxymethylbutenyl diphosphate reductase1: | | GRMZM2G027059
| Vallabhaneni, R; Wurtzel, E. 2009. Plant Physiol. 150:562-572 | | Reference: December 10th, 2011
Gene Product: December 10th, 2011
Gene Model: December 10th, 2011
|
| 5 months ago | dxs1 | deoxy xylulose synthase 1: leaf specific; function inferred from Medicago trunculata gene sequence and expression pattern (Walter 2002) | 6.05 | GRMZM2G137151
| Vallabhaneni, R; Wurtzel, E. 2009. Plant Physiol. 150:562-572 | | Reference: December 10th, 2011
Gene Product: August 17th, 2004
Variation: June 24th, 2006
Gene Model: December 9th, 2011
|
| 5 months ago | dxr1 | deoxy xylulose reductoisomerase1: enzyme catalyzes the first committed step of the plastidial pathway to apocarotenoids during mycorrhizal establishment | 3.04 | GRMZM2G056975
| Vallabhaneni, R; Wurtzel, E. 2009. Plant Physiol. 150:562-572 | | Reference: December 10th, 2011
Gene Product: December 10th, 2011
Variation: May 11th, 2005
Gene Model: December 9th, 2011
|
| 5 months ago | vp10 | viviparous10: yellow endosperm, colored aleurone, green seedlings, adherent | 10.07 | | Giulini, A et al. 2011. Plant Growth Regulation 64:99-108 | | Reference: December 2nd, 2011
Gene Product: February 22nd, 2007
Variation: June 5th, 2007
|
| 5 months ago | aasr1 | abscisic acid stress ripening1: protects the major ARS protein in maize; protects kernel yield under water deficit; SSR pio059, IDP9044 | 10.02 | GRMZM2G136910
| Virlouvet, LC, et al. 2011. Plant Physiol. 157:917-936 | | Reference: November 4th, 2011
Gene Product: December 1st, 2011
Variation: September 1st, 2003
Gene Model: November 1st, 2011
|
| 5 months ago | aasr2 | abscisic acid stress ripening2: | 2.05 | GRMZM5G854138
| Virlouvet, LC, et al. 2011. Plant Physiol. 157:917-936 | | Reference: November 4th, 2011
Gene Product: December 1st, 2011
Variation: September 1st, 2003
Gene Model: November 1st, 2011
|
| 5 months ago | bss1 | bundle sheath strands specific1: encodes a photosynthesis-related protein with a deduced amino acid sequence with high homology to tomato Asr1 in the C-terminal region; stress-inducilible; | 8.06 | GRMZM2G168552
| Virlouvet, LC, et al. 2011. Plant Physiol. 157:917-936 | | Reference: November 4th, 2011
Gene Product: December 1st, 2011
Variation: November 30th, 2011
Gene Model: November 1st, 2011
|
| 5 months ago | aasr3 | absicisic acid stress ripening3: | 2.04 | GRMZM2G044132
| Virlouvet, LC, et al. 2011. Plant Physiol. 157:917-936 | | Reference: November 4th, 2011
Gene Product: December 1st, 2011
Gene Model: November 1st, 2011
|
| 5 months ago | et*-N357C | etchedN357C: | 9.03 - 9.08 | | Neuffer, MG. 1994. Personal communication | | Reference: September 1st, 2003
Variation: November 29th, 2011
|
| 5 months ago | pgm1 | phosphoglucomutase1: electrophoretic mobility; null allele is known; cytosolic; monomeric | 1.09 - 1.10 | GRMZM2G023289
| Hoisington, DA and Coe, EH. 1990. Stadler Genet Symp 19:331-352 | | Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: November 28th, 2011
|
| 5 months ago | pgm2 | phosphoglucomutase2: electrophoretic mobility; null allele is known; cytosolic; monomeric | 5.01 | GRMZM2G109383
| Weissinger, HH et al. 1979. Genetics 91:s136 | | Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: November 28th, 2011
|
| 5 months ago | bx1 | benzoxazinless1: plastid localized, committed step in cyclic hydroxamates/DIMBOA synthesis; insect resistance in young seedlings; SSR umc1022 | 4.00 | GRMZM2G085381
| Basse, C. 2005. Plant Physiol. 138:1774-1784 | | Reference: November 23rd, 2011
Gene Product: October 14th, 2011
Variation: September 1st, 2003
Gene Model: October 14th, 2011
|
| 5 months ago | psaB (cp) | psaB: | | | Basse, C. 2005. Plant Physiol. 138:1774-1784 | | Reference: November 23rd, 2011
Gene Product: January 19th, 2006
|
| 5 months ago | glu2 | beta-glucosidase2: cDNA produces higher activity in transgenic tobacco; shares 20 amino acids with an N-terminal sequence reported for membrane-bound beta-glucosidase | 2.04 | | Basse, C. 2005. Plant Physiol. 138:1774-1784 | | Reference: November 23rd, 2011
Gene Product: January 19th, 2006
Variation: September 1st, 2003
|
| 5 months ago | mfs18 | male flower specific18: cDNA sequence, associated with tassel glume vascular bundles | 3.04 | | Basse, C. 2005. Plant Physiol. 138:1774-1784 | | Reference: November 23rd, 2011
Gene Product: January 19th, 2006
Variation: September 1st, 2003
|
| 5 months ago | rpl17 | ribosomal protein L17: endosperm cDNA 5C05G01, similar to barley ribosomal protein | 8.03 | | Basse, C. 2005. Plant Physiol. 138:1774-1784 | | Reference: November 23rd, 2011
Gene Product: January 19th, 2006
Variation: September 1st, 2003
|
| 5 months ago | tps6 | terpene synthase6: | 10.03 | | Basse, C. 2005. Plant Physiol. 138:1774-1784 | | Reference: November 23rd, 2011
Gene Product: September 3rd, 2008
Variation: September 3rd, 2008
|
| 5 months ago | umi8 | ustilago maydis induced8: | 3.08 | | Basse, C. 2005. Plant Physiol. 138:1774-1784 | | Reference: November 23rd, 2011
Variation: April 17th, 2008
|
| 5 months ago | umi11 | ustilago maydis induced11: | 7.00 | | Basse, C. 2005. Plant Physiol. 138:1774-1784 | | Reference: November 23rd, 2011
Gene Product: January 19th, 2006
Variation: March 27th, 2007
|
| 5 months ago | umi12 | ustilago maydis induced12: | 1.10 | | Basse, C. 2005. Plant Physiol. 138:1774-1784 | | Reference: November 23rd, 2011
Gene Product: January 19th, 2006
Variation: April 17th, 2008
|
| 5 months ago | pco139502b | : | 3.08 | | Basse, C. 2005. Plant Physiol. 138:1774-1784 | | Reference: November 23rd, 2011
Gene Product: April 8th, 2011
Variation: April 17th, 2008
|
| 6 months ago | rul1 | rum1-like1: | | GRMZM2G163848
| Wang, Yijun et al. 2010. Mol Biol Rep 37:3991-4001 | | Reference: November 10th, 2011
Variation: November 18th, 2011
Gene Model: November 17th, 2011
|
| 6 months ago | met2 | DNA methyl transferase2: | 10.06 | GRMZM2G025592
| Garcia-Aguilar, M; Michaud, C; LeBlanc, O; Grimanelli, D. 2010. Plant Cell. 22:3249-3267 | | Reference: February 9th, 2011
Gene Product: September 1st, 2006
Variation: January 25th, 2011
Gene Model: November 16th, 2011
|
| 6 months ago | ms27 | male sterile27: description pending | | | Albertsen, MC. 1996. MNL 70:30-31 | | Reference: September 1st, 2003
Variation: November 9th, 2011
|
| 6 months ago | abph1 | aberrant phyllotaxy1: decussate leaves and ear shoots (opposite at nodes) frequent; variable, recessive | 2.03 | | Lee, BH, et al. 2009. Plant Physiol. 150:205-16 | | Reference: January 5th, 2010
Gene Product: April 20th, 2009
Variation: November 8th, 2011
|
| 6 months ago | an1 | anther ear1: andromonoecious dwarf, intermediate stature; few tassel branches; responds to gibberellins; an1-6923 includes deletion of Bz2+ | 1.08 | GRMZM2G081554
| Schmelz, EA et al. 2011. Proc Natl Acad Sci, USA 108:5455-5460 | | Reference: September 15th, 2011
Gene Product: September 16th, 2011
Variation: September 1st, 2003
Gene Model: November 7th, 2011
|
| 6 months ago | aasr5 | abscisic acid stress ripening5: | 10.04 | GRMZM2G052100
| Virlouvet, LC, et al. 2011. Plant Physiol. 157:917-936 | | Reference: November 4th, 2011
Gene Product: November 4th, 2011
Variation: April 14th, 2007
Gene Model: November 1st, 2011
|
| 6 months ago | pan1 | pangloss1: Defines polarization in divisions of subsidiary mother cells at guard cells | | GRMZM5G836190
| Humphries, JA, et al. 2011. Plant Cell. 23:2273-84 | | Reference: October 11th, 2011
Variation: November 6th, 2010
Gene Model: November 2nd, 2011
|
| 6 months ago | rop2 | Rho-related protein from plants2: ROP2 protein interacts with PAN1 to polaize asymmetric cell division; SSR umc1699 | 4.10 | GRMZM5G846811
| Humphries, JA, et al. 2011. Plant Cell. 23:2273-84 | | Reference: October 11th, 2011
Gene Product: April 1st, 2004
Variation: January 25th, 2011
Gene Model: November 2nd, 2011
|
| 6 months ago | rop9 | Rho-related protein from plants 9: ROP9 protein interact with PAN1 to polarize asymmetric cell division | 5.03 | GRMZM5G803949
| Humphries, JA, et al. 2011. Plant Cell. 23:2273-84 | | Reference: October 11th, 2011
Gene Product: April 1st, 2004
Gene Model: November 2nd, 2011
|
| 6 months ago | kn1 | knotted1: dominant Kn1 plants have localized proliferation of tissue at vascular bundles on leaf | 1.10 | | Xu, XM, et al. 2011. Science. 333:1141-1144 | | Reference: November 1st, 2011
Variation: September 1st, 2003
|
| 6 months ago | asr1 | absence of seminal roots1: dominant Asr1 seedlings lack seminal roots | 4.01 - 4.02 | | Miranda, LTde. 1980. MNL 54:18-19 | | Reference: September 1st, 2003
Variation: November 1st, 2011
|
| 6 months ago | tga1 | teosinte glume architecture1: glumes indurated, erect, long, boat-shaped; factor transferred from teosinte | 4.05 | GRMZM2G101511
| Preston, J; Wang, H; Kursel, L; Doebley, JF; Kellogg, EA. 2011. New Phytol. 0:epub | | Reference: October 31st, 2011
Variation: September 1st, 2003
Gene Model: October 28th, 2011
|
| 6 months ago | bx7 | benzoxazinone synthesis7: cytosolic O-methyl transferase; synthesis of cyclohydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc2039, INDEL IDP478. | 4.03 | GRMZM2G441753
| Frey, M et al. 2003. A 2-oxoglutarate-dependent dioxygenase is integrated in DIMBOA-biosynthesis. Phytochemistry 62:371-376 | | Reference: October 25th, 2011
Gene Product: October 31st, 2011
Variation: October 26th, 2011
Gene Model: October 19th, 2011
|
| 6 months ago | bx8 | benzoxazinone synthesis8: cytosolic glucosyltransferase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings | 4.01 | GRMZM2G085054
| Sicker, D; Frey, M; Schulz, M; Gierl, A. 2000. Int Rev Cytol. 198:319-46 | | Reference: October 25th, 2011
Gene Product: October 20th, 2011
Variation: October 31st, 2011
Gene Model: October 20th, 2011
|
| 6 months ago | bx9 | benzoxazinone synthesis9: cytosolic glucosyl transferase; redundant with bx8; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings | 1.06 | GRMZM2G161335
| Sicker, D; Frey, M; Schulz, M; Gierl, A. 2000. Int Rev Cytol. 198:319-46 | | Reference: October 25th, 2011
Gene Product: October 20th, 2011
Variation: October 27th, 2011
Gene Model: October 20th, 2011
|
| 6 months ago | bx6 | benzoxazinone synthesis6: cytosolic 2-oxoglutarate-dependent dioxygenase; synthesis of cyclohydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1232 | 4.01 | | Sicker, D; Frey, M; Schulz, M; Gierl, A. 2000. Int Rev Cytol. 198:319-46 | | Reference: October 25th, 2011
Gene Product: October 26th, 2011
Variation: October 19th, 2011
|
| 6 months ago | mop1 | mediator of paramutation1: recessive changes B' phenotype to dark, similar to B1-I | 2.04 | | McGinnis, K et al. 2006. Genetics 173:1637-1647 | | Reference: October 25th, 2011
Gene Product: August 8th, 2006
Variation: August 8th, 2006
Recommended by Ed Coe:
January 8th, 2008
|
| 6 months ago | bx4 | benzoxazinone synthesis4: endoplasmic reticulum P450 monoxygenase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings; NAM SNP PHM1184 | 4.01 | GRMZM2G172491
| Sicker, D; Frey, M; Schulz, M; Gierl, A. 2000. Int Rev Cytol. 198:319-46 | | Reference: October 25th, 2011
Gene Product: October 24th, 2011
Variation: September 1st, 2003
Gene Model: October 24th, 2011
|
| 6 months ago | b1 | colored plant1: dominant B1 plants have anthocyanin in major plant tissues; some alleles affect aleurone and embryo color; regulates flavonoid enzymes; SSR umc1776 | 2.03 | GRMZM2G172795
| McGinnis, K et al. 2006. Genetics 173:1637-1647 | | Reference: October 25th, 2011
Gene Product: October 13th, 2010
Variation: September 1st, 2003
Gene Model: September 22nd, 2011
|
| 6 months ago | glu1 | beta glucosidase1: electrophoretic mobility; plastidic; dimeric; intralocus hybrid bands occur | 10.03 | | Czjzek, M et al. 2000. Proc Natl Acad Sci, USA 97:13555-13560 | | Reference: October 25th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 6 months ago | su1 | sugary1: endosperm wrinkled and translucent when dry; starch debranching enzyme I absent in developing endosperm, phytoglycogen but no debranching enzyme in germinating seeds; su1-am sugary-amylaceous; su1-st recessive starchy; application: the "sweet corn" gene - recessive kernels are creamy-sweet at milk stage | 4.05 | | Kubo, Akiko et al. 2010. Plant Physiol 153:956-969 | | Reference: June 3rd, 2011
Gene Product: October 25th, 2011
Variation: September 1st, 2003
|
| 6 months ago | zpu1 | pullulanase-type starch debranching enzyme1: single copy, cDNA clone similar to rice sequence; SSR umc1003The zpu1 gene encodes a pullulanase-type starch debranching enzyme. Analysis of plants homozygous for the zpu1-204 mutation reveal the genes role in starch catabolism. zpu1-204 endosperm accumulate maltooligosaccharides not found in wild type plants. zpu1-204 are also deficient for linear maltooligosaccharides. | 2.05 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Gene Product: October 25th, 2011
Variation: September 1st, 2003
|
| 6 months ago | rmr1 | required to maintain repression1: | 6.07 | | McGinnis, K et al. 2006. Genetics 173:1637-1647 | | Reference: October 25th, 2011
Gene Product: April 30th, 2008
Variation: April 30th, 2008
|
| 6 months ago | rmr2 | required to maintain repression 2: | | | McGinnis, K et al. 2006. Genetics 173:1637-1647 | | Reference: October 25th, 2011
Variation: January 8th, 2010
|
| 6 months ago | bx3 | benzoxazinone synthesis3: endoplasmic reticulum monoxygenase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1017 | 4.01 | GRMZM2G167549
| Sicker, D; Frey, M; Schulz, M; Gierl, A. 2000. Int Rev Cytol. 198:319-46 | | Reference: October 25th, 2011
Gene Product: October 19th, 2011
Variation: September 1st, 2003
Gene Model: October 24th, 2011
|
| 6 months ago | bx5 | benzoxazinone synthesis5: endoplasmic reticulum monoxygenase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1276. | 4.01 | GRMZM2G063756
| Sicker, D; Frey, M; Schulz, M; Gierl, A. 2000. Int Rev Cytol. 198:319-46 | | Reference: October 25th, 2011
Gene Product: October 24th, 2011
Variation: September 1st, 2003
Gene Model: October 24th, 2011
|
| 6 months ago | bx2 | benzoxazinone synthesis2: endoplasmic reticulum P450 monoxygenase; synthesis cyclic hyroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1164, umc1682 | 4.01 | GRMZM2G085661
| Sicker, D; Frey, M; Schulz, M; Gierl, A. 2000. Int Rev Cytol. 198:319-46 | | Reference: October 25th, 2011
Gene Product: October 19th, 2011
Variation: June 2nd, 2006
Gene Model: October 24th, 2011
|
| 6 months ago | iso3 | isoamylase-type starch debranching enzyme3: | | | Dinges, JR; Colleoni, C; James, MG; Myers, AM. 2003. Plant Cell. 15:666-680 | | Reference: June 3rd, 2011
Gene Product: October 25th, 2011
Variation: April 7th, 2011
|
| 6 months ago | bgaf1 | beta glucosidase aggregating factor1: | 7.02 | GRMZM2G172204
| Yu, H et al. 2009. Biochemistry 48:2924-32 | | Reference: October 24th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: October 24th, 2011
|
| 6 months ago | tsa1 | tryptophan synthase alpha subunit1: With products of orp1 and orp2 genes, forms tryptophan synthase. Plastidic. | | GRMZM5G841619
| Frey, M et al. 2009. Phytochemistry 70:1645-51 | | Reference: October 24th, 2011
Gene Product: October 21st, 2011
Gene Model: October 14th, 2011
|
| 6 months ago | igl1 | indole-3-glycerol phosphate lyase1: mRNA production induced by volicitin, forms free indole | 1.11 | GRMZM2G046163
| DUP. Frey, M et al. 2009. Phytochemistry 70:1645-1651 | | Reference: October 24th, 2011
Gene Product: October 14th, 2011
Variation: February 17th, 2007
Gene Model: October 14th, 2011
|
| 6 months ago | cenH3 | centromeric histone H3: | 6.06 | GRMZM2G158526
| Jin, W, et al. 2005. Plant Cell. 17:1412-1423 | | Reference: May 14th, 2011
Gene Product: June 24th, 2005
Gene Model: October 24th, 2011
|
| 7 months ago | ga2 | gametophyte factor2: Ga2 pollen grains are competitively superior to ga2 on Ga2 silks. | 5.04 | | Kermicle, J; Evans, MMS. 2010. J Hered 101:737-749 | | Reference: October 17th, 2011
Variation: October 17th, 2011
|
| 7 months ago | cg1 | corngrass1: semidominant Cg1 plants have narrow leaves, extreme tilleringCg1 encodes two tandem miR156 genes that are overexpressed in the meristem and lateral organs. George Chuck, 2007 | 3.02 | | Chuck, G, et al. 2011. Proc Natl Acad Sci, USA. 0:doi: 10.1073/pnas.1113971108 | | Reference: October 14th, 2011
Gene Product: October 4th, 2010
Variation: September 1st, 2003
Recommended by George Chuck:
September 25th, 2007
|
| 7 months ago | tsh5 | tassel sheath5: | | | Whipple, C, et al. 2010. Plant Cell. 22:565-578 | | Reference: June 26th, 2010
Variation: October 11th, 2011
|
| 7 months ago | sbp2 | SBP-domain protein2: cDNA sequence; SSR's umc1573, umc1574, umc1623 | 4.09 | | Cardon, G et al. 1999. Gene 237:91-104 | | Reference: September 1st, 2003
Gene Product: October 7th, 2011
Variation: October 8th, 2011
|
| 7 months ago | sbp5 | SBP-domain protein5: | | | Cardon, G et al. 1999. Gene 237:91-104 | | Reference: September 1st, 2003
Gene Product: October 7th, 2011
Variation: October 8th, 2011
|
| 7 months ago | tsh4 | tassel sheath4: tsh4 mutant tassels have one to five long tassel branches, instead of ~13 observed in non-mutant W22. In place of tassel branches, long bract leaves were present, clustered at the base of the tassel. | 7.03 | GRMZM2G307588
| Chuck, G; Whipple, C; Jackson, D; Hake, S. 2010. Development. 137:1243-50 | | Reference: October 4th, 2010
Gene Product: October 8th, 2011
Variation: October 6th, 2011
Gene Model: October 6th, 2011
|
| 7 months ago | sbp7 | SBP-domain protein7: | | | Cardon, G et al. 1999. Gene 237:91-104 | | Reference: September 1st, 2003
Gene Product: October 7th, 2011
Variation: October 8th, 2011
|
| 7 months ago | sbp1 | SBP-domain protein1: cDNA sequence, SSR's umc1575, umc1624 | 5.04 | | | | Gene Product: October 7th, 2011
Variation: October 8th, 2011
|
| 7 months ago | sbp3 | SBP-domain protein3: cDNA sequence with SSR's umc1572, umc1595 | 6.02 | | Cardon, G et al. 1999. Gene 237:91-104 | | Reference: September 1st, 2003
Gene Product: October 7th, 2011
Variation: September 1st, 2003
|
| 7 months ago | sbp4 | SBP-domain protein4: cDNA sequence includes SSR's umc1571 and umc1570 | 9.03 | | Cardon, G et al. 1999. Gene 237:91-104 | | Reference: September 1st, 2003
Gene Product: October 7th, 2011
Variation: September 1st, 2003
|
| 7 months ago | tsh2 | tassel sheath2: The mutant was identified in a screen for the presences of bracts subtending tassel long branches and of the spikelet pairs of both the ear and tassel (normally these bracts are repressed and thus not present). However, bracts subtending either the sessile or pedicellate spikelet are absent, as in normal plants. Tassel branching it also reduced. The tsh2 mutant is recessive. | | | Whipple, C, et al. 2010. Plant Cell. 22:565-578 | | Reference: June 26th, 2010
Variation: October 6th, 2011
|
| 7 months ago | tsh3 | tassel sheath3: | | | Vollbrecht, E; Schmidt, RJ pp.13-40 in Bennetzen, J; Hake, S. (eds) 2009 (vol1). Springer-Verlag, NY | | Reference: August 21st, 2010
Variation: October 6th, 2011
|
| 7 months ago | tsh1 | tassel sheath1: leaves develop at base of tassel branches and spikelet pairstsh1 was positionally cloned by Whipple et al, 2010. It was initially mapped between umc2059 and bnlg1740. The position was narrowed using a larger population, synteny with rice provided two candidate genes, one was selected based on sequencing differences from progenitors for three independent EMS alleles. | 6.07 | | Whipple, C, et al. 2010. Plant Cell. 22:565-578 | | Reference: June 26th, 2010
Gene Product: April 28th, 2010
Variation: October 6th, 2011
|
| 7 months ago | ij1 | iojap striping1: many variable white stripes and margin patterns on leaves (compare cm1); conditions chloroplast defects that are cytoplasmically inherited | 7.03 | | Han, CD; Derby, RJ; Schnable, PS; Martienssen, RA. 1995. Maydica 40:13-22 | | Reference: October 5th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 7 months ago | w1 | white seedling1: white seedling (yellow with l1), germinates normally; plastid transcripts variously aberrant | 6.05 | | Han, CD; Derby, RJ; Schnable, PS; Martienssen, RA. 1995. Maydica 40:13-22 | | Reference: October 5th, 2011
Variation: September 1st, 2003
|
| 7 months ago | w3 | white seedling3: like vp2; w3-8686 pale endosperm, pale green seedling in dim light | 2.08 - 2.07 | | Han, CD; Derby, RJ; Schnable, PS; Martienssen, RA. 1995. Maydica 40:13-22 | | Reference: October 5th, 2011
Gene Product: September 1st, 2003
Variation: September 26th, 2008
|
| 7 months ago | afd1 | absence of first division1: male and female sterility; early meiosis | 6.07 | GRMZM2G059037
| Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | AT5G05490 (TAIR)
LOC_Os05g50410 (MSU/TIGR)
LOC_Os05g50410 (Gramene) | Reference: September 28th, 2011
Gene Product: July 30th, 2009
Variation: August 12th, 2011
Gene Model: July 14th, 2011
|
| 7 months ago | am1 | ameiotic1: male and female sterility - anaphase I equatorial; alleles am1-pra1(was pra1), am1-2 (was am2)affects switch to meiotic cell cycle | 5.02 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: October 6th, 2009
|
| 7 months ago | as1 | asynaptic1: synaptic failure in male and female | 1.05 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: September 1st, 2003
|
| 7 months ago | dsy2 | desynaptic2: synapsis and recombination reduced; RAD51 complexes abnormal | 5.03 - 5.04 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: May 20th, 2006
|
| 7 months ago | dv1 | divergent spindle1: chromosomes unoriented at metaphase I; partial male and female sterility | | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: May 21st, 2010
|
| 7 months ago | dy1 | desynaptic1: partial to complete male and female sterility; chromosomes separate after synapsis | | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: September 1st, 2003
|
| 7 months ago | mei1 | meiosis1: male sterile with dominant Mei1, chromatin hyper-condensed, chromosomes sticky in metaphase I and anaphase I | 5.00 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: June 29th, 2005
|
| 7 months ago | ms28 | male sterile28: anaphase I disturbed, spindle persists | 1.00 - 1.05 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: September 1st, 2003
|
| 7 months ago | ms43 | male sterile43: anaphase I impaired (aka ms29) | 8.05 - 8.09 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: September 1st, 2003
|
| 7 months ago | pam1 | plural abnormalities of meiosis1: desynchronized meiotic divisions and premeiotic mitosis; male sterile, incompletely female sterile | 1.05 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: September 1st, 2003
|
| 7 months ago | po1 | polymitotic1: (aka ms4, ms6) repeats 2nd meiotic division in male and female | 6.01 - 6.01 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: May 20th, 2006
|
| 7 months ago | st1 | sticky chromosome1: small plant, striate leaves, pitted kernels resulting from sticky chromosomes; st1-e heightened by high temperature | 4.03 - 4.04 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: June 17th, 2008
|
| 7 months ago | va1 | variable sterile1: variable male and female fertility; cytokinesis fails in anaphase I | 7.03 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: September 1st, 2003
|
| 7 months ago | cop2 | coatomer protein2: cDNA | 10.07 | | | | Gene Product: September 1st, 2003
Variation: September 28th, 2011
|
| 7 months ago | mac1 | multiple archesporial cells1: (was lar*-487) several archesporial cells undergo normal meiosis; plants partially female sterile but completely male sterileBeware: this locus could accidentally be confused with the act1 (actin 1) locus, which also was called MAc1 in past publications! | 10.03 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: September 1st, 2003
|
| 7 months ago | sgo1 | shugoshin centromeric cohesion1: male and female sterile; meiosis; centromere cohesion; segregation of sister chromatids. | 7.02 | GRMZM2G074082
| Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Gene Product: July 29th, 2009
Variation: July 29th, 2004
Gene Model: July 14th, 2011
|
| 7 months ago | phs1 | poor homologous synapsis1: affects homology search | 9.00 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Gene Product: September 5th, 2006
Variation: May 28th, 2011
|
| 7 months ago | seg2 | segregation2: exhibits abnormal homologous synapsis | | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Variation: August 11th, 2011
|
| 7 months ago | rad51b | recombination protein51 gene b: one of two loci producing cDNA homologous to yeast protein required with Dmc1 protein for meiotic homologous recombination | 3.05 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Gene Product: June 30th, 2005
Variation: February 24th, 2007
|
| 7 months ago | rad51a | recombination protein51 gene a: one of two loci producing cDNA homologous to yeast protein required with Dmc1 protein for meiotic homologous recombination | 7.04 | | Cande, WZ; Freeling, M. 2011. Genetics. 188:491-8 | | Reference: September 28th, 2011
Gene Product: June 30th, 2005
Variation: May 21st, 2005
|
| 7 months ago | P | plant color component at R1: anthocyanin pigmentation in seedling leaf tip, coleoptile, anthers | | GRMZM5G822829
| Robbins, TP et al. 1991. Genetics 129:271-283 | | Reference: December 3rd, 2009
Gene Product: October 13th, 2010
Variation: December 3rd, 2009
Gene Model: September 23rd, 2011
|
| 7 months ago | pr1 | red aleurone1: changes purple aleurone to red; encodes flavonoid 3'-hydroxylase | 5.05 | GRMZM2G025832
| Sharma, M, et al. 2011. Genetics. 188:69-79 | | Reference: June 10th, 2011
Gene Product: June 3rd, 2011
Variation: September 1st, 2003
Gene Model: September 22nd, 2011
|
| 7 months ago | cpx2 | coproporphyrinogen III oxidase2: duplicate to cpx1 | 10.06 | GRMZM2G032282
| Williams, P; Hardeman, K; Fowler, J; Rivin, C. 2006. Plant J. 45:727-739 | | Reference: September 22nd, 2011
Gene Product: September 1st, 2003
Variation: June 29th, 2005
Gene Model: September 22nd, 2011
|
| 7 months ago | cpx1 | coproporphyrinogen III oxidase1: (was dks8) duplicate to cpx2; recessive eliminates development of the shoot pole during embryogenesis | 2.02 | | Williams, P; Hardeman, K; Fowler, J; Rivin, C. 2006. Plant J. 45:727-739 | | Reference: September 22nd, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 8 months ago | emp3 | empty pericarp3: small, extremely collapsed, defective, poorly viable kernel | 8.08 - 8.08 | | England, DJ and Neuffer, MG. 1987. MNL 61:51 | | Reference: October 26th, 2004
Variation: September 19th, 2011
|
| 8 months ago | cpps2 | copalyl diphosphate synthase2: encodes ent-kaurene synthase, a copalyl diphosphate synthase protein having close identity with An1 gene product; likely duplicate function explains why an1 plants are not fully dwarfed (Harris et al. 2005) | 1.04 | GRMZM2G044481
| Schmelz, EA et al. 2011. Proc Natl Acad Sci, USA 108:5455-5460 | | Reference: September 15th, 2011
Gene Product: September 16th, 2011
Variation: September 15th, 2011
Gene Model: September 12th, 2011
Recommended by Ed Coe:
January 8th, 2008
|
| 8 months ago | ptac12 | plastid transcriptionally active chromosome 12 homolog: chloroplast transcription; mutants are pale green seedling lethals | | GRMZM2G005938
| Williams-Carrier, R, et al. 2010. Plant J. 63:167-177 | LOC_Os08g09270 (MSU/TIGR)
LOC_Os08g09270 (Gramene) | Reference: September 13th, 2011
Variation: April 21st, 2011
Gene Model: April 12th, 2011
|
| 8 months ago | pet2 | photosynthetic electron transport2: lacks cytochrome bf polypeptides | | GRMZM2G087063
| Williams-Carrier, R, et al. 2010. Plant J. 63:167-177 | At5g52110 (TAIR)
LOC_Os10g37840 (MSU/TIGR)
LOC_Os10g37840 (Gramene) | Reference: September 13th, 2011
Gene Product: April 19th, 2011
Variation: April 19th, 2011
Gene Model: April 19th, 2011
|
| 8 months ago | tha5 | thylakoid assembly5: | | GRMZM2G300408
| Williams-Carrier, R, et al. 2010. Plant J. 63:167-177 | AT4G14870 (TAIR)
LOC_Os08g30830 (MSU/TIGR)
LOC_Os08g30830 (Gramene) | Reference: September 13th, 2011
Gene Product: April 21st, 2011
Variation: August 26th, 2010
Gene Model: April 12th, 2011
|
| 8 months ago | crp4 | chloroplast RNA processing4: chloroplast RNA processing and turnover; INDEL probe TIDP3337. | | GRMZM2G377761
| Williams-Carrier, R, et al. 2010. Plant J. 63:167-177 | AT3G03710 (TAIR)
LOC_Os07g07310 (MSU/TIGR)
LOC_Os07g07310 (Gramene) | Reference: September 13th, 2011
Gene Product: April 12th, 2011
Variation: April 21st, 2011
Gene Model: April 12th, 2011
|
| 8 months ago | a1 | anthocyaninless1: colorless aleurone, green or brown plant; brown pericarp with P1-rr | 3.09 | | McClintock, B. 1968. Carnegie Inst Wash Yearbook 66:20-28 | | Reference: September 8th, 2011
Gene Product: October 13th, 2010
Variation: September 1st, 2003
|
| 8 months ago | nced5 | nine-cis-epoxycarotenoid dioxygenase5: | | | Alexandrov, NN, et al. 2009. Plant Mol Biol. 69:179-194 | | Reference: January 11th, 2009
Gene Product: February 22nd, 2007
Variation: September 1st, 2011
|
| 8 months ago | abh1 | abscisic acid 8'-hydroxylase1: | | | Li, F et al. 2008. Plant Physiol 146:1333-1345 | | Reference: August 25th, 2011
Gene Product: September 1st, 2011
Variation: September 1st, 2011
|
| 8 months ago | abh2 | abscisic acid 8'-hydroxylase2: | | | Li, F et al. 2008. Plant Physiol 146:1333-1345 | | Reference: August 25th, 2011
Gene Product: September 1st, 2011
Variation: September 1st, 2011
|
| 8 months ago | vp14 | viviparous14: viviparous; yellow endosperm; SSR umc1218 | 1.08 | GRMZM2G014392
| Li, F et al. 2008. Plant Physiol 146:1333-1345 | | Reference: August 25th, 2011
Gene Product: February 22nd, 2007
Variation: June 25th, 2007
Gene Model: May 13th, 2011
|
| 8 months ago | al1 | albescent plant1: variably cross-banded to white leaves, pale yellow endosperm, some alleles viviparous; y3 is allelic | 2.01 | | Phipps, IF. 1929. Cornell Univ Agric Exp Stn Memoir 125:1-63 | | Reference: August 23rd, 2011
Variation: April 11th, 2011
|
| 8 months ago | f1 | fine stripe1: virescent seedling, fine white stripes on base and margin of older leaves | 1.07 | | Phipps, IF. 1929. Cornell Univ Agric Exp Stn Memoir 125:1-63 | | Reference: August 23rd, 2011
Variation: September 1st, 2003
|
| 8 months ago | g2 | golden plant2: (aka g5, pg14, v19, pg-m, bsd1) golden pale-green, weak plants; sheaths whitish yellow-green; pg-m (now g2-pg14::I) of Peterson is a mutable allele that responds to En; small bundle sheath plastids; SSR umc2101, umc2102, umc2103, umc2104, umc2105, umc2106, umc2107, umc2108.pale green seedling lethal, reduced Rubisco and NADP-malic enzyme, small bundle sheath plastids | 3.00 - 3.01 | | Phipps, IF. 1929. Cornell Univ Agric Exp Stn Memoir 125:1-63 | | Reference: August 23rd, 2011
Gene Product: September 5th, 2006
Variation: September 1st, 2003
|
| 8 months ago | v12 | virescent12: like v3 | 5.05 - 5.06 | | Phipps, IF. 1929. Cornell Univ Agric Exp Stn Memoir 125:1-63 | | Reference: August 23rd, 2011
Variation: September 1st, 2003
|
| 8 months ago | v13 | virescent13: first leaf with green tip; greens slowly | 5.00 - 5.04 | | Phipps, IF. 1929. Cornell Univ Agric Exp Stn Memoir 125:1-63 | | Reference: August 23rd, 2011
Variation: September 1st, 2003
|
| 8 months ago | v16 | virescent16: like v2; deficiency of chloroplastic 16S and 23S rRNA | 8.06 | | Phipps, IF. 1929. Cornell Univ Agric Exp Stn Memoir 125:1-63 | | Reference: August 23rd, 2011
Variation: September 1st, 2003
|
| 8 months ago | v17 | virescent17: like v1, but greening from base to tip | 4.04 - 4.05 | | Phipps, IF. 1929. Cornell Univ Agric Exp Stn Memoir 125:1-63 | | Reference: August 23rd, 2011
Variation: September 1st, 2003
|
| 8 months ago | v18 | virescent18: like v1 | 10.06 - 10.07 | | Phipps, IF. 1929. Cornell Univ Agric Exp Stn Memoir 125:1-63 | | Reference: August 23rd, 2011
Variation: September 1st, 2003
|
| 8 months ago | yg2 | yellow-green2: like yg1; complements pyd1 but not wd1 | 9.00 | | Phipps, IF. 1929. Cornell Univ Agric Exp Stn Memoir 125:1-63 | | Reference: August 23rd, 2011
Variation: December 17th, 2010
|
| 9 months ago | prp5 | pathogenesis related protein5: | 1.06 | | Chintamanani, S; Hulbert, S; Johal, GS; Balint-Kurti, P. 2010. Genetics. 184:813-825 | | Reference: August 5th, 2011
Variation: August 20th, 2011
|
| 9 months ago | crs2 | chloroplast RNA splicing2: albino to very pale green seedling lethals; chloroplastic group II intron splicing | 8.02 | GRMZM2G132021
| Ostheimer, G; Hadjivassiliou, H; Kloer, DP; Barkan, A; Matthews, B. 2005. J Mol Biol. 345:51-69 | AT5G16140 (TAIR)
LOC_Os01g04130 (MSU/TIGR)
LOC_Os01g04130 (Gramene) | Reference: March 6th, 2010
Gene Product: June 21st, 2005
Variation: August 16th, 2011
Gene Model: July 15th, 2011
|
| 9 months ago | ba1 | barren stalk1: ear shoots and most tassel branches and spikelets absent | 3.06 | | Gallavotti, A et al. 2011. Plant Cell 23:1756-1771 | | Reference: August 15th, 2011
Gene Product: July 28th, 2005
Variation: September 1st, 2003
|
| 9 months ago | baf1 | barren stalk fastigiate1: ear shoots often absent, or distorted and fused to culm at base; tassel branches erect, bundled, fused to culm at base | 9.02 | | Gallavotti, A et al. 2011. Plant Cell 23:1756-1771 | | Reference: August 15th, 2011
Variation: September 1st, 2003
|
| 9 months ago | tdy1 | tie-dyed1: Leaf blades develop variegated chlorotic and green regions; chlorotic regions hyperaccumulate carbohydrates.(Braun 2008) | 6.07 | GRMZM2G321778
| Ma, Y et al. 2009. Plant Physiol 149:181-194 | | Reference: May 20th, 2011
Variation: August 13th, 2011
Gene Model: July 14th, 2011
|
| 9 months ago | why1 | whirly1: albino to pale green seedling lethal, plastid ribosome deficient | 6.01 | GRMZM2G155662
| Melonek, J et al. 2010. Planta 232:471-481 | AT1G14410 (TAIR)
LOC_Os0605350 (MSU/TIGR)
LOC_Os0605350 (Gramene) | Reference: May 20th, 2011
Gene Product: July 22nd, 2009
Variation: August 12th, 2011
Gene Model: July 14th, 2011
|
| 9 months ago | caf2 | crs2 associated factor2: ivory colored leaf, seedling lethal; RNA splicing | 3.04 | AC199526.5_FG003
| Barkan, A. 2009. maize gene review DOI-caf2:unassigned | AT1G23400 (TAIR)
LOC_Os01g21990 (MSU/TIGR)
LOC_Os01g21990 (Gramene) | Reference: November 17th, 2009
Gene Product: July 23rd, 2009
Variation: August 12th, 2011
Gene Model: July 14th, 2011
|
| 9 months ago | d8 | dwarf plant8: Dominant D8 plants resemble d1; extreme alleles not responsive to gibberellins. | 1.09 | GRMZM2G144744
| Camus-Kulandaivelu, L, et al. 2008. Genetics. 180:1107-1121 | | Reference: August 11th, 2011
Gene Product: February 12th, 2007
Variation: August 30th, 2007
Gene Model: May 11th, 2011
|
| 9 months ago | ppr5 | pentatricopeptide repeat 5: stabilizes the chloroplast unspliced trnG precursor | 4.08 | GRMZM2G155662
| Barkan, A. 2009. maize gene review DOI-ppr5:unassigned | AT4G39620 (TAIR)
LOC_Os02g51480 (MSU/TIGR)
LOC_Os02g51480 (Gramene) | Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: August 5th, 2011
Gene Model: July 14th, 2011
Recommended by Alice Barkan:
November 11th, 2008
|
| 9 months ago | hm2 | Helminthosporium carbonum susceptibility2: dominant Hm2 plants resistant to Cochliobolus carbonum; like Hm1, masked by Hm1 | 9.03 - 9.04 | | Chintamanani, S; Multani, DS; Ruess, H; Johal, G. 2008. Mol Plant-Microbe Interact. 21:79-86 | | Reference: August 5th, 2011
Variation: September 1st, 2003
|
| 9 months ago | prp1 | pathogenesis-related protein1: cDNA clone, single copy, deduced protein product is basic (vs. acidic), normally accumulates during germination,induced by fungal elicitors but not wounding | 8.03 | | Chintamanani, S; Hulbert, S; Johal, GS; Balint-Kurti, P. 2010. Genetics. 184:813-825 | | Reference: August 5th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 9 months ago | wip1 | wound induced protein1: wounding-induced transcript, cDNA clone (601bp) sequenced; homologous to Bowman-Birk proteinase inhibitors | 8.01 | | Chintamanani, S; Hulbert, S; Johal, GS; Balint-Kurti, P. 2010. Genetics. 184:813-825 | | Reference: August 5th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 9 months ago | prp4 | pathogenesis related protein4: | 7.00 | | Chintamanani, S; Hulbert, S; Johal, GS; Balint-Kurti, P. 2010. Genetics. 184:813-825 | | Reference: August 5th, 2011
Variation: August 4th, 2008
|
| 9 months ago | gbss1b | granule-bound starch synthase1b: | | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Variation: August 4th, 2011
|
| 9 months ago | tub6b | beta tubulin6b: cDNA sequence, gene specific probe | 3.06 | | Villemur, R; Haas, NA; Joyce, CM; Snustad, DP; Silflow, CD. 1994. Plant Mol Biol 24:295-315 | | Reference: September 1st, 2003
Gene Product: September 1st, 2003
Variation: August 4th, 2011
|
| 9 months ago | sbe3 | starch branching enzyme3: | 8.06 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Gene Product: June 6th, 2011
Variation: August 3rd, 2011
|
| 9 months ago | na3 | nana3: short plant with erect stiff leaves, like na1 | 4.05 | | Neuffer, MG and England, DJ. 1995. MNL 69:43-46 | | Reference: September 1st, 2003
Variation: August 2nd, 2011
|
| 9 months ago | kin1 | knotted1 induced1: | 7.06 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Variation: August 1st, 2011
|
| 9 months ago | see2a | senescence enhanced2a: | | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Variation: August 1st, 2011
|
| 9 months ago | see2b | senescence enhanced2b: | | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Variation: August 1st, 2011
|
| 9 months ago | mir3 | maize insect resistance3: | | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Variation: August 1st, 2011
|
| 9 months ago | caf1 | crs2 associated factor1: ivory to very pale yellow leaf, seedling lethal, chloroplast intron II splicing | 7.02 | GRMZM2G083950
| Barkan, A. 2009. maize gene review DOI-caf1:unassigned | AT2G20020 (TAIR)
LOC_Os01g31110 (MSU/TIGR)
LOC_Os01g31110 (Gramene) | Reference: November 17th, 2009
Gene Product: July 23rd, 2009
Variation: July 23rd, 2011
Gene Model: July 14th, 2011
|
| 10 months ago | scm1 | self-colored marbled1: colored aleurone component of R1-mb | 10.06 | | Panavas, T et al. 1999. Genetics 153:979-991 | | Reference: July 16th, 2011
Variation: September 1st, 2003
|
| 10 months ago | lcm1 | Lc similarity at Marbled1: component of R1-mb - sequence similar to Lc1 or P components, but without their plant color effects | 10.06 | | Panavas, T et al. 1999. Genetics 153:979-991 | | Reference: July 16th, 2011
Variation: September 1st, 2003
|
| 10 months ago | lcm2 | Lc similarity at Marbled2: component of R1-mb - sequence similar to Lc1 or P components, but without their plant color effects | 10.06 | | Panavas, T et al. 1999. Genetics 153:979-991 | | Reference: July 16th, 2011
Variation: September 1st, 2003
|
| 10 months ago | wtf1 | what's this factor1: chloroplast group II intron splicing | 8.03 | GRMZM2G403797
| Barkan, A. 2009. maize gene review DOI-wtf1:unassigned | AT4G01037 (TAIR)
LOC_Os05g49610 (MSU/TIGR)
LOC_Os05g49610 (Gramene) | Reference: November 17th, 2009
Gene Product: July 21st, 2009
Variation: May 9th, 2009
Gene Model: July 15th, 2011
Recommended by Alice Barkan:
November 11th, 2008
|
| 10 months ago | crs4 | chloroplast RNA splicing4: pale yellow green seedling lethal; splicing of ndhA and ndhB transcprits | | GRMZM2G481231
| Barkan, A. 2009. maize gene review DOI-crs4:unassigned | | Reference: November 17th, 2009
Gene Product: July 24th, 2009
Variation: July 24th, 2009
Gene Model: July 15th, 2011
|
| 10 months ago | tha8 | thylakoid assembly8: | 2.06 | AC217965.2_FG012
| | | Variation: July 22nd, 2009
Gene Model: July 15th, 2011
|
| 10 months ago | ppr10 | pentatricopeptide repeat10: pale yellow green, non-photosynthesizing seedling lethal; atpH and psaJ mRNA stabilization | 6.02 | GRMZM2G177169
| Barkan, A. 2009. maize gene review DOI-ppr10:unassigned | AT2G18940 (TAIR)
LOC_Os05g19380 (MSU/TIGR)
LOC_Os05g19380 (Gramene) | Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: July 23rd, 2009
Gene Model: July 14th, 2011
Recommended by Alice Barkan:
November 11th, 2008
|
| 10 months ago | ts6 | tasselseed6: Recessive alleles have more than two florets per spikelet, and reversed germ orientation. Dominant Ts6 tassels are compact, pistillate to mixed and ears have irregular kernel placement. | 1.11 | GRMZM5G862109
| Chuck, G. 2009. maize gene review DOI:unassigned | | Reference: November 17th, 2009
Gene Product: July 24th, 2009
Variation: February 7th, 2009
Gene Model: July 14th, 2011
Recommended by George Chuck:
September 25th, 2007
|
| 10 months ago | crs1 | chloroplast RNA splicing1: pale green seedling lethal; chloroplast ATP synthase null; promotes atpF intron splicing | 1.07 | GRMZM2G078412
| Barkan, A. 2009. maize gene review DOI-crs1:unassigned | AT5G16180 (TAIR)
LOC_Os08g27150 (MSU/TIGR)
LOC_Os08g27150 (Gramene) | Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: July 22nd, 2009
Gene Model: July 14th, 2011
|
| 10 months ago | bd1 | branched silkless1: ear silkless with indeterminate branches at base; tassel proliferated, bushy | 7.05 | GRMZM2G307119
| Chuck, G; Whipple, C; Jackson, D; Hake, S. 2010. Development. 137:1243-50 | At5g18560 (TAIR)
LOC_Os07g47330 (MSU/TIGR)
LOC_Os01g21820 (Gramene) | Reference: October 4th, 2010
Gene Product: July 27th, 2009
Variation: September 1st, 2003
Gene Model: July 14th, 2011
|
| 10 months ago | ra2 | ramosa2: tassel many-branched, upright, not conical like ra1; irregular kernel placement | 3.03 - 3.03 | AC233943.1_FG002
| Gallavotti, A, et al. 2010. Development. 137:2849-56 | AT5G63090 (TAIR)
LOC_Os01g07480 (MSU/TIGR)
LOC_Os01g07480 (Gramene) | Reference: August 20th, 2010
Gene Product: July 27th, 2009
Variation: July 27th, 2009
Gene Model: July 14th, 2011
|
| 10 months ago | ppr2 | pentatricopeptide repeat 2: albino seedling lethal; chloroplast translation | 7.00 | GRMZM2G341621
| Barkan, A. 2009. maize gene review DOI-ppr2:unassigned | AT3G06430 (TAIR)
LOC_Os03g19650 (MSU/TIGR)
LOC_Os03g19650 (Gramene) | Reference: November 17th, 2009
Gene Product: July 23rd, 2009
Variation: February 18th, 2004
Gene Model: July 14th, 2011
|
| 10 months ago | tha4 | thylakoid assembly4: pale green seedling lethal; thlakoid protein targeting: tat pathway | 1.08 | GRMZM2G472651
| Barkan, A. 2009. maize gene review DOI:unassigned | AT5G28750 (TAIR)
LOC_Os03g43430 (MSU/TIGR)
LOC_Os03g43430 (Gramene) | Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: July 22nd, 2009
Gene Model: July 14th, 2011
|
| 10 months ago | rnc1 | ribonuclease III domain protein1: albino to pale green seedling lethal; RNA splicing | 3.06 | GRMZM2G035820
| Barkan, A. 2009. maize gene review DOI-rnc1:unassigned | AT4G37510 (TAIR)
LOC_Os01g5951 (MSU/TIGR)
LOC_Os01g5951 (Gramene) | Reference: November 17th, 2009
Gene Product: July 22nd, 2009
Variation: March 31st, 2005
Gene Model: July 14th, 2011
|
| 10 months ago | me1 | NADP malic enzyme1: coleoptilar, electrophoretic mobility; null allele is known; tetrameric | 3.04 - 3.07 | | Goodman, MM et al. 1980. Genetics 96:697-710 | | Reference: September 1st, 2003
Gene Product: July 12th, 2011
|
| 10 months ago | me3 | NADP malic enzyme3: chloroplast C4-photosynthesis, delivers CO2 to ribulose bisphosphate carboylase | 3.02 | | Keith, CS et al. 1993. Plant Physiol 101:329-332 | | Reference: September 1st, 2003
Gene Product: July 12th, 2011
Variation: October 15th, 2010
|
| 10 months ago | me4 | NADP malic enzyme4: Embryo and root specific | | | Detarsio, E et al. 2008. Plant Mol Biol 68:355-367 | | Reference: July 12th, 2011
Gene Product: July 12th, 2011
Variation: October 15th, 2010
|
| 10 months ago | knox3 | knotted related homeobox3: shoot meristem and developing stem specific, very similar in sequence and expression pattern to rs1, kn1, knox4 and knox8 | 1.10 | | Evans, M. 2007. Plant Cell. 19:46-62 | | Reference: October 1st, 2010
Gene Product: September 1st, 2003
Variation: July 2nd, 2011
|
| 10 months ago | whp1 | white pollen1: duplicate factor with c2 for pollen color and for anthocyanins | 2.08 | | Mo, YY et al. 1992. Proc Natl Acad Sci, USA 89:7213-7217 | | Reference: June 22nd, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 11 months ago | dhn3 | dehydrin3: | 4.06 | | | | Variation: June 17th, 2011
|
| 11 months ago | wri2 | WRI1 transcription factor2: | 4.08 | GRMZM2G174834
| Rogowsky, P. 2011. Plant Physiol. 2011:doi: 10.1104/pp.111.173641 | | Reference: June 14th, 2011
Variation: April 11th, 2011
Gene Model: April 7th, 2011
|
| 11 months ago | nec7 | necrotic7: lighter green seedling becoming necrotic in crossbands | 5.04 - 5.09 | | Neuffer, MG and England, DJ. 1995. MNL 69:43-46 | | Reference: September 1st, 2003
Variation: June 14th, 2011
|
| 11 months ago | et2 | etched2: endosperm etched; seedlings off-white albino, with occasional greening of leaf tips | 2.02 - 2.03 | | Stinard, PS and Schnable, PS. 1994. MNL 68:107-108 | | Reference: September 1st, 2003
Variation: June 14th, 2011
|
| 11 months ago | pyk1 | pyruvate kinase1: | 1.05 | | Rogowsky, P. 2011. Plant Physiol. 2011:doi: 10.1104/pp.111.173641 | | Reference: June 14th, 2011
Gene Product: April 8th, 2011
|
| 11 months ago | wri1 | WRI1 transcription factor1: | | GRMZM2G124524
| Rogowsky, P. 2011. Plant Physiol. 2011:doi: 10.1104/pp.111.173641 | | Reference: June 14th, 2011
Variation: April 11th, 2011
Gene Model: April 8th, 2011
|
| 11 months ago | gl15 | glossy15: glossy leaf surface expressed after 3rd leaf (aka gl4) | 9.03 | | Evans, MMS; Poethig, RS. 1991. MNL 65:91-92 | | Reference: June 13th, 2011
Variation: September 1st, 2003
|
| 11 months ago | a2 | anthocyaninless2: like a1, but red pericarp with P1-rr | 5.03 | | Sharma, M, et al. 2011. Genetics. 188:69-79 | | Reference: June 10th, 2011
Gene Product: September 1st, 2003
Variation: May 19th, 2006
|
| 11 months ago | bz1 | bronze1: modifies purple aleurone and plant color to pale or reddish brown; anthers yellow-fluorescent; allele bz1-m4 = sh1-bz1-m4; SSR phi017 | 9.02 | | Sharma, M, et al. 2011. Genetics. 188:69-79 | | Reference: June 10th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 11 months ago | bz2 | bronze2: like bz1; anthers not fluorescent; an1-6923 mutation includes deletion for Bz2; encodes a glutathione S-transferase conjugating anthocyanins into the vacuole | 1.08 | | Sharma, M, et al. 2011. Genetics. 188:69-79 | | Reference: June 10th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 11 months ago | c2 | colorless2: colorless aleurone, reduced plant and cob color; C2-Idf dominant inhibitor; duplicate factor with whp1 for pollen color and for anthocyanins | 4.08 | | Sharma, M, et al. 2011. Genetics. 188:69-79 | | Reference: June 10th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 11 months ago | cms-S | cytoplasmic male sterility: female-transmitted male sterility, S type; restored by Rf3 | | | Josephson, LM. 1955. Empire J Exp Agric 23(89):1-10 | | Reference: June 9th, 2011
Variation: June 8th, 2011
|
| 11 months ago | cms-T | cytoplasmic male sterility: female-transmitted male sterility, Texas type; restored by Rf1 Rf2 | | | Josephson, LM. 1955. Empire J Exp Agric 23(89):1-10 | | Reference: June 9th, 2011
Variation: September 1st, 2003
|
| 11 months ago | mas1 | malate synthase1: cDNA isolated by antibody screen | 2.04 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 11 months ago | ccp2 | cysteine protease2: mRNA differentially enhanced in late- vs. early-senescing lines; similarity to rice oryzain gamma (cysteine protease) and castor bean vacuolar processing enzyme | 7.02 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 11 months ago | pld1 | phospholipase D1: cDNA clone, amino acid sequence 90% similar to rice PLD | 3.03 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 11 months ago | ae1 | amylose extender1: glassy, tarnished endosperm; high amylose content; application: highly linear starch is used for food films, fibers, and other industrial purposes | 5.04 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Gene Product: June 6th, 2011
Variation: June 21st, 2006
|
| 11 months ago | chn2 | chitinase2: acidic chitinase I, based on cDNA sequence similarity; Southern blots suggest multiple copies | 6.01 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 11 months ago | exg1 | exoglucanase1: genomic and cDNA clones; role in cell wall expansion | 1.10 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Gene Product: September 1st, 2003
Variation: September 1st, 2003
|
| 11 months ago | sbe1 | starch branching enzyme1: maize kernel cDNA sequence is similar to starch branching enzyme I of bacteria, encodes a putative 64-amino acid plastid transit peptide (aka sbe1) | 5.03 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Gene Product: September 1st, 2003
Variation: June 6th, 2011
|
| 11 months ago | tub6 | beta tubulin6: | 8.08 | | Yandeau-Nelson, M et al. 2011. Plant Physiol 156:479-490 | | Reference: June 6th, 2011
Variation: April 2nd, 2007
|
| 11 months ago | ago104 | argonaute104: | 6.07 | GRMZM2G141818
| Singh, M, et al. 2011. Plant Cell. 23:443-458 | | Reference: June 3rd, 2011
Gene Product: September 2nd, 2010
Variation: September 11th, 2007
Gene Model: March 31st, 2011
|
| 11 months ago | zyp1 | synaptonemal complex protein ZYP1: | | | Golubovskaya, I et al. 2011. J Exp Bot 62:1533-1544 | | Reference: May 26th, 2011
Gene Product: March 2nd, 2011
Variation: March 2nd, 2011
|
| 11 months ago | rgd1 | ragged seedling1: (aka lbl1) seedling leaves narrow, thread-like, have difficulty in emerging; low temperature enhances expression | 6.01 - 6.01 | | Douglas, R, et al. 2010. Plant Cell. 22:1441-1451 | | Reference: September 2nd, 2010
Gene Product: May 20th, 2008
Variation: May 25th, 2011
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